Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l03
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   4.3  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   5.7  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   5.7  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   7.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.6  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   7.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   10.0 
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   10.0 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   10.0 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   10.0 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   10.0 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   10.0 

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 133 QH*DKHSTLRNKFSQNFSWIKSKLYFNENKIKNIFIQQHE 14
           +H    S   N+ + NFS I S LY  ++  KN+  +Q +
Sbjct: 340 RHNSSQSFYGNRSTTNFSIINSGLYLKKDAAKNLLAKQFD 379


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -1

Query: 82  SWIKSKLYFNENKIKNIFIQQH 17
           SW++S+ + N+N++ N  + +H
Sbjct: 161 SWLQSRAHKNQNQVTNSVVNEH 182


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 GNSLRFPWMLAMLWTELYHEVLCV 317
           G S RF W++  LW+ +Y  +LC+
Sbjct: 205 GRSARFEWVVCFLWS-IYICLLCL 227


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 564 PSIFLKLYILVQHNSQPIQQPCLVHIAVISILELYHSTI*LYDY*FETTDHRHLTNPMKS 385
           PS F+K Y L+ +N        + H A   +LE    T+  +D  FE +   HL  P+ +
Sbjct: 143 PSQFMKFYNLLSNNKNVSNIGKITHFAFADMLENPEHTLKQWDI-FEKS-VAHLPGPLSA 200


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 141 IIISTRTNIPLYEINSHK 88
           +++S + N PLY +N HK
Sbjct: 229 VMVSRKENSPLYTVNRHK 246


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 193 QLSFYSVGVQISIRAI 240
           +LSF+S G+QIS++ I
Sbjct: 167 ELSFFSTGIQISVQGI 182


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 120 NIPLYEINSHKISHGSNQNYISMK 49
           +IP  E++ HKI  GS  N + +K
Sbjct: 185 HIPPKELSEHKIQSGSGSNKLEVK 208


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 157 SQIAMNYHQH*DKHSTLRNKFSQNFSWIKS 68
           S++A+ YH   DKHS + +    +  W+K+
Sbjct: 449 SRVAVGYHFIHDKHSLITDVVEIDRHWLKA 478


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 106 RNKFSQNFSWIKSKLYFNENKIKNIFIQQHEKPAF 2
           +NK  +  +  K  L  + N IKN+ + ++++PAF
Sbjct: 97  QNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAF 131


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 310 STSWYSSVHNIANI 269
           STS YSS HNI NI
Sbjct: 255 STSTYSSEHNIGNI 268


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 106 RNKFSQNFSWIKSKLYFNENKI 41
           + KF QN  WI  + YF  N +
Sbjct: 335 KTKFHQNIDWIALEKYFEVNAL 356


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 426 ETTDHRHLTNPMKSHR*LAVIDETNATEIIISPKRKLRRALRGTVLSITSPTSMETGDCF 247
           E    RH+  P       +  +   +T++ ++PK+K   A +G+  S  SP S E+    
Sbjct: 627 EIFHERHIPTPETGPNKPSKNNILKSTQVPVTPKQKSSTANKGST-SSPSPPSSESKKTK 685

Query: 246 RSDG 235
           RS G
Sbjct: 686 RSWG 689


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 618 WFYYFSSILAGLFLIL 571
           WFY+ + I+ G F+IL
Sbjct: 243 WFYWMNMIVGGFFVIL 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,037
Number of Sequences: 5004
Number of extensions: 55659
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)