Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l03
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094...    29   3.4  
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   7.8  

>06_02_0068 +
           11107493-11107653,11109116-11109218,11109311-11109423,
           11109502-11109624,11110165-11110266,11110367-11110532,
           11111215-11111331,11111438-11111478,11111735-11111836,
           11111924-11112140,11112271-11112498,11112580-11112707,
           11112804-11112921,11113020-11113235,11113314-11113463,
           11113553-11113629,11113973-11114190,11114443-11114656,
           11114744-11114823,11114898-11115015,11115092-11115262,
           11116124-11116292,11116404-11116447,11116620-11116662,
           11116743-11116888,11118337-11118431,11118579-11119477,
           11120540-11120638,11120907-11121002,11123447-11123568,
           11123675-11123767,11123922-11124114
          Length = 1653

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 609 YFSSILAGLFLILKAPSIFLKLYILVQHNSQPIQQPCLVHIA 484
           Y SSI++G FL+  +P  F  L I++   S+P+    L  IA
Sbjct: 538 YQSSIMSGTFLVEDSPYYFCMLEIVLGKLSKPLFNQSLKKIA 579


>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 295 SSVHNIANIHGNRRLFPIRWPVYLSALQRNRS*VALSYNT 176
           + V+    I   R L  I  P YL+ALQ+  S V +SY++
Sbjct: 351 NGVNEDNTIIDRRGLMTIHMPAYLNALQKGVSTVMISYSS 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,987
Number of Sequences: 37544
Number of extensions: 309122
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)