Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l03
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   2.3  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   2.3  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical ...    28   7.0  

>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +2

Query: 332  EMIISVALVSSITASYLCDF-IGFVRCL*SVVSN-Q*SYNYIVEWYN--SRMEITAMCTR 499
            E +I+  LV S   +Y CD  +G ++ + + V N +  YNY+  W+N  + M   +  + 
Sbjct: 997  ESMIAARLVCSFGTNYNCDGRLGKMKMVENEVINPEGFYNYLTGWFNVDNMMYYVSQASF 1056

Query: 500  HGC*MGWE 523
            +    GWE
Sbjct: 1057 YPTPPGWE 1064


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +2

Query: 332  EMIISVALVSSITASYLCDF-IGFVRCL*SVVSN-Q*SYNYIVEWYN--SRMEITAMCTR 499
            E +I+  LV S   +Y CD  +G ++ + + V N +  YNY+  W+N  + M   +  + 
Sbjct: 994  ESMIAARLVCSFGTNYNCDGRLGKMKMVENEVINPEGFYNYLTGWFNVDNMMYYVSQASF 1053

Query: 500  HGC*MGWE 523
            +    GWE
Sbjct: 1054 YPTPPGWE 1061


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 257 PVSMDVGDVMDRTVPRSALRNFRLGEMIISVALVSSITASYLCDFIGFV 403
           P ++ V  V DRT  R+A R ++L  +++   +V + TAS   +F GF+
Sbjct: 399 PDAIIVRKVFDRT-RRTAKRQWKLKRLVVDGNIVGNETASVADEFQGFM 446


>AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical
           protein Y76A2B.2 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 272 VGDVMDRTVPRSALRNFRLGEMIISVALVSSITASYLCDF 391
           +G++  RT+ +S + NF  G   + +   SSI  S + +F
Sbjct: 345 IGEMKTRTIEKSKISNFEFGGSTVKLCNSSSIDKSKIQNF 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,975
Number of Sequences: 27780
Number of extensions: 305631
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)