Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l01
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    32   0.069
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    31   0.21 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   2.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.6  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.4  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   4.5  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   4.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.5  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   6.0  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    26   6.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.9  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   7.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  

>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 261 DSETRSMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEELTRQTINETVSV-TTKS 437
           + + +  +++L +   EEE L   E    +  L N E S  EEL  +T   + +V  + +
Sbjct: 43  EKQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKESSRNEELLTETTTPSPAVKASPA 102

Query: 438 LKRRSIDVEDRRMPWSIFPEQLTQTE 515
             + S+   DR     I  + LT TE
Sbjct: 103 STKLSVSENDRLSIPEITKDNLTLTE 128


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/89 (25%), Positives = 42/89 (47%)
 Frame = +3

Query: 267 ETRSMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEELTRQTINETVSVTTKSLKR 446
           ET  +  + +E   ++E  S  E S + K L+  +  V     ++ +NE  S     LK 
Sbjct: 21  ETDLVFTKRSECKVKDELFSDKENSILCKQLKELDLVVSSN--KEFLNEKTSDQISFLKP 78

Query: 447 RSIDVEDRRMPWSIFPEQLTQTEKAQTLA 533
           R   VE +    SI+P + +  +K++ L+
Sbjct: 79  RETVVEKKLANGSIWPNETSHLDKSRDLS 107


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 219 KMIMEPSISSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDILKALRNS 368
           K+I EPS    +SC+S+  + K  L  F      L+   +  IL  +++S
Sbjct: 347 KIIYEPSCEPTESCNSDQTAFKGMLARFLGYTMQLAPYTVETILPYIQSS 396


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 282 KKQLTEFGFEEENL-SKSEMSDILKALRNSECSVEEELTRQTINETVSVTTKSLKRR 449
           KK L  F  E+E L S  E  D+L++    E  + EEL+    NE   ++ K  KRR
Sbjct: 670 KKNLLLFCKEDEFLYSDQENEDLLESF---ERVISEELSLLKSNEPSDISLKKRKRR 723


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 573 LDDNYLWTLTLYKSLVFELFLSESIAQERYS 481
           L D+    LTLYK+ VFE F  E++AQ+ ++
Sbjct: 436 LTDSLQAALTLYKTAVFEAF--ENLAQQYFT 464


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 237 SISSDDSCDSETRSMKKQLTEF--GFEEENLSKSEMSDILKALRNSECSVEEEL--TRQT 404
           S+SSD + DS+ +++ + +T      E +N +  E    L+ +R     +E  L   R+ 
Sbjct: 293 SVSSDRTLDSQLQTVNENITRISTSIELKNTALEEEHGDLQQIRGKAKELETLLRGKRKR 352

Query: 405 INETVSVTTK 434
           ++E +SV  K
Sbjct: 353 LDEVLSVYEK 362


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 240 ISSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDILKA 356
           IS  +  D++TR++ K LTE    + +L +  MS I  A
Sbjct: 276 ISQAEGYDAQTRTLGKYLTEIYLFDHDLLRYPMSKIAAA 314


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 243 SSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDIL---KALRNSE 371
           SSDDS D+E  S ++  ++  F +E     E+S+     ++L NSE
Sbjct: 619 SSDDSVDNEMYSDEENSSKGAFPDEENENRELSEDYSGDESLENSE 664


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/98 (19%), Positives = 37/98 (37%)
 Frame = +3

Query: 237 SISSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEELTRQTINET 416
           S S+DD  +++     ++L     E +  +      +  + +NSE S++   T     E+
Sbjct: 89  SPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQES 148

Query: 417 VSVTTKSLKRRSIDVEDRRMPWSIFPEQLTQTEKAQTL 530
           V  +         D ED         E + Q  K + +
Sbjct: 149 VDSSNSESSDEESDSEDETQQLLRELENIKQERKREQM 186


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/80 (27%), Positives = 42/80 (52%)
 Frame = +3

Query: 216 IKMIMEPSISSDDSCDSETRSMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEELT 395
           +K I E  + +DDSC+ +   ++KQ      E+E     E  +ILK +       +++  
Sbjct: 32  LKDITEEDVGTDDSCNKKFLEVQKQK-----EDE-----EDEEILKGVD----LTQQDSV 77

Query: 396 RQTINETVSVTTKSLKRRSI 455
           R+ I+E  S++  S KR+++
Sbjct: 78  REKIHEIQSMSQLSEKRKAL 97


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 276 SMKKQLTEFGFEEENLSKSEMSDILKALRNSECSVEEEL 392
           S++K+L+E+G+ EE  S ++   ++ +   ++  + EEL
Sbjct: 17  SIEKKLSEYGWGEEAASLADFVLVMLSNGKTQTEINEEL 55


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 PSISSDDS-CDSETRSMKKQLTEFGFEEENLSKSEMSDILK 353
           PSI  ++S C       ++++    ++EENLSK+E     K
Sbjct: 35  PSIDMNESDCSGTGTPSEERIRRLRWDEENLSKAEQQKSAK 75


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 81  FYSHFNDFLSH*IFSCY--VCINFYYSRIDLVPDSILQNF 194
           F SH+ DF S  +++ +  +C + YY   D +   ILQ F
Sbjct: 775 FISHY-DFSSLNVYASFQKLCCDLYYGSDDYIHSPILQVF 813


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +3

Query: 144 FYYSRIDLVPDSILQNFTLILLN*IKMIMEPSISSDDSCDSETRSMKKQLTEFGFEEENL 323
           F  ++IDLVP  +L  +   L N       P+I    +  S   ++K Q         NL
Sbjct: 199 FVINKIDLVPSEVLNKWVTYLRN-----FFPTIPMRSASGSGNSNLKHQSASASSTISNL 253

Query: 324 SKSEMSDILKALRNSECSV 380
            KS  S   K    S  +V
Sbjct: 254 LKSLKSYSAKKKLKSSLTV 272


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 370 SEFLRAFKISLISDLLKFSSSNPNSVSCFFILRVSESQLSSDDIDGSM 227
           S F    K  ++S L      +P+ VS    L  + S L  DD+DGS+
Sbjct: 453 SGFFGHLKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDLDGSV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,204
Number of Sequences: 5004
Number of extensions: 48566
Number of successful extensions: 161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)