Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l01
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693...    29   4.7  
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    29   4.7  
04_04_0576 + 26346611-26346637,26346758-26346883,26347161-263472...    28   8.3  
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883...    28   8.3  

>05_05_0336 +
           24167891-24167982,24168501-24168600,24169216-24169375,
           24170119-24170566,24171020-24171095,24171204-24171250,
           24171345-24171528
          Length = 368

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
 Frame = +3

Query: 231 EPSISSDDSCDSETRSMKKQLTEFGFEEENLS------KSEMSDILKALRNSECSVEEEL 392
           EPS SS     SET  +K  L E  F+ ++        +    DI  A +  E  ++E+L
Sbjct: 222 EPSQSSKAVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDL 281

Query: 393 TR---QTINETVSVTTKSLKRRSIDVEDRRMPWSIFPEQLTQTEKAQT 527
                +   E +    +  +  +++ E+ R    +  +QLT+++ A+T
Sbjct: 282 QEVDDRLEEEEIDAAAEREEYLTLEQEEYRQRVDMLKKQLTESKAART 329


>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 309 EEENLSKSEMSDILKALRNSECSVEEELTRQTINETVSV 425
           E+  L+ +E ++ L  + N+  S+E+EL R+TI + VS+
Sbjct: 169 EDRELNMAEKTNYLLFMINAFQSLEDELVRETILQLVSL 207


>04_04_0576 +
           26346611-26346637,26346758-26346883,26347161-26347295,
           26348162-26348332
          Length = 152

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 132 VCINFYYSRIDLVPDSILQNFTLILLN*IKMIMEPSISSDDSCDSETRSMKKQLTEFGFE 311
           VC++FYY+ I     S L+ F  ++ +     ++P I+  D       +  K++ E   E
Sbjct: 73  VCVSFYYTNI----KSSLKLFVDLIEHKGSDCVKPFIALQDCIKINPEAFSKEILE---E 125

Query: 312 EENLSKSEMSDI 347
           EEN  ++E S++
Sbjct: 126 EENDEEAEKSNL 137


>02_05_0415 +
           28787353-28787496,28787658-28788204,28788297-28788392,
           28788532-28788645,28788929-28789962,28790053-28790124
          Length = 668

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 321 LSKSEMSDILKALRNS---ECSVEEELTRQTINETVSVTTKSLKRRSIDVEDRRMPWSIF 491
           +S +  + ++K L +S   E S EEE+++Q +  +V+   KSL   +  VE  +      
Sbjct: 537 ISSASKAAVVKTLDDSSVTEASSEEEVSQQEVEASVNSIVKSLDEFTFTVEGTQK--DEL 594

Query: 492 PEQLTQTEKAQ 524
            E++  T+ A+
Sbjct: 595 TEEMKSTDDAE 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,974
Number of Sequences: 37544
Number of extensions: 243381
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)