Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k23
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   3.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   4.5  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 188 YQKLTFISLICVDSNLK 238
           Y    FI+LICVDSN+K
Sbjct: 33  YTVWVFIALICVDSNIK 49


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 564 LPRDCSSIKGPAGTYLIHPGHA--PVDTWC 647
           L  +CS++K P   + ++ GH    V  WC
Sbjct: 44  LSMECSAVKDPVDFFAVYDGHGGDKVAKWC 73


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 360 LLVYAY*VNRTYTNR*NLPSTIPVRVHTNSEASVPDANLTETIPLPELMGEVKELEP 530
           L++YA  +N   T     PST+ + VH+ + ++    +L  T    EL  E+ +  P
Sbjct: 253 LVLYALQINEKKTPTRGFPSTLIIHVHSLNLSTAESHDLESTD--SELWSEISDAGP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,580
Number of Sequences: 5004
Number of extensions: 36617
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)