Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k22
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   1.3  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   5.1  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   6.7  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   6.7  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 621 HWSPSFAGGLQFAGASVHQRFLHARLR-GIP 710
           +W P     L+F G+S +   +H RLR G+P
Sbjct: 604 YWDPFMITDLKFIGSSENAELIHQRLRNGLP 634


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 176 RLRPTRKAAARILLHVFQTSAKRTIVSCILNSD 78
           R +  ++   R+LL     + K TI+ C+LN D
Sbjct: 8   RQQKLKEREVRVLLLGLDNAGKTTILKCLLNED 40


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +1

Query: 592 FAHFARILNFIGVLVSPEDFNLLVRRFIKDSYTLD----YVEFLKAVEA 726
           +A++ + + F G  +     + +V+R+IK SY  D    ++EFL  V A
Sbjct: 12  YAYYNQTVTFFGKALDVLPGSPIVKRYIKSSYQNDPLRTFIEFLLLVFA 60


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 541 PYFQDYEMV--AKNDGRITFAHFARILNFIGVLVSPEDF 651
           P   D+EM   A++    TFA F R+ +F  +  SPE F
Sbjct: 478 PELSDFEMYMRARSLNPATFAGFVRLNHFTLLCCSPERF 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,390
Number of Sequences: 5004
Number of extensions: 61764
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)