Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k21
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   4.5  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 455 SRCFQHYFIWLFTRPVKLQRRSASKYYNGLRSSNYENTFQRDNNVSFFSRN*FLL----R 288
           +R F  +F  ++    K  + +  K++      +  +  Q DN+ S+FS+   +L     
Sbjct: 691 ARFFTRFFRVIYIVLSKYTQWTTQKFFEEANKQDDTSEVQNDNSSSWFSKARNILSGSNE 750

Query: 287 VRPIQFLTLQCLLI 246
           V P +F    C+L+
Sbjct: 751 VLPFRFSPTMCILL 764


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 221 IPAPYESF*SFLMSDSYVVYISEFHTIDQ*RKLIS 117
           +P P  +  SF++S + +VY+ E + ID  + L+S
Sbjct: 333 LPDPSSNSHSFVISPNDIVYVRERNQIDHVKYLVS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,519
Number of Sequences: 5004
Number of extensions: 54065
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)