Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1k16
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 2.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 3.4
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 3.4
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 27 3.4
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 4.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 4.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.9
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.9
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 175 AHVPPTVHCLLSNQLKRSIIIDRHWYERPNRPHAFNYE 288
AH+ P +C +SN LK ++ + +RP +P N E
Sbjct: 523 AHLIPD-YCGMSNDLKHQLLTELEVSKRPKKPELPNQE 559
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 594 MNVTISYSTVTFYIQFDFIRFI 659
+++ I Y+T +F++ DF+RFI
Sbjct: 2522 LHIFIKYTTSSFFLTDDFVRFI 2543
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 10 KYRD-FCSGYSKKHVDFDDLTD--HISDEKIRQLKQVYETT 123
++RD + SGY KKH D D D H DE R LK+ T+
Sbjct: 222 RHRDKYDSGYFKKHYDDDMRFDQGHFQDE--RDLKKYVRTS 260
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 94 RQLKQVYETTEDIELMAGIWVENLKEGAHVPPTVHCLLSNQLKRSIIIDRHWYERPNRP 270
R K+ D E AG+ +++ E H+ PT+ L N SI+ D++ ++P +P
Sbjct: 3 RWFKKTLPRPPDEEESAGLTNKDIVETNHLYPTITNLSLNSDTSSILFDKN--KKPLKP 59
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 3.4
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = +1
Query: 199 CLLSNQLKRSIIIDRHWYERPN-RPHAFNY-EQLQEIRKASLALLLCYVGDDVEKIQPKA 372
CLL + +++SII + H Y RP+ P +Y + L I++ ++ + D +E++
Sbjct: 108 CLLFDLIEKSIIDEFHSYVRPSMNPTLSDYCKSLTGIQQCTVDKAPIF-SDVLEEL---- 162
Query: 373 FVIVGKGNNLV--SCDEIPAID 432
F+ + K +N++ S DEI I+
Sbjct: 163 FIFLRKHSNILVPSVDEIEIIE 184
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 280 NYEQLQEIRKASLALLLCYVGDDVEKIQPKAFVIVGKGNNLVSCDEIPAIDFTH 441
N ++ I A+L +L + +D E I ++ G+G+ +C IPA+ +TH
Sbjct: 348 NIPHIRVIGDATLGPMLAHKAED-EGIAAVEYIAKGQGHVNYNC--IPAVMYTH 398
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 467 FSVYDSSFQCVKSIAGISSQLT-KLFPFPTITKALGWIFSTSSPT*HSRSAKE 312
+S+ +S Q K + S + + K P TI KAL + S +SP+ H+ +KE
Sbjct: 611 YSISESIVQKGKGTSMNSEETSVKHGPTSTIGKALQRVASVTSPSRHNSDSKE 663
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 272 CGRLGLSYQCLSMIILLLSWFD 207
CG LGL+ C S +IL W++
Sbjct: 731 CGALGLNLTCASRVILCDVWWN 752
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 539 YVNACGNLRSKTLHHII*NECYHKLQYSYI 628
YVN + ++ H N CY K Y YI
Sbjct: 385 YVNTESSSKTPAPHKHTFNSCYQKKDYGYI 414
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 601 TFILYYMVQSLRPQISTRIHVVVSKLLHKMS*VMNSLSAIYIK 473
TFI+YY + S S + ++VS H S ++N+ + +++
Sbjct: 9 TFIVYYFIISFSYAFSIKQEIIVSS--HNASSILNTTAFWFVE 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,070
Number of Sequences: 5004
Number of extensions: 61509
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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