Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k16
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0024 + 11934710-11934792,11934905-11935205                       29   3.5  
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951...    29   3.5  

>07_02_0024 + 11934710-11934792,11934905-11935205
          Length = 127

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 443 QCVKSIAGISSQLTKL--FPFPTITKALGWIFSTSSPT*HSRSAKEAFL 303
           +C+ +I G+S  + +L  FPFP   +A  W ++  +     +    AFL
Sbjct: 27  RCMYTIKGVSPDVIRLQLFPFPLFGRAKQWFYTNRAIVNTRKKRSTAFL 75


>04_04_0739 -
           27693768-27694305,27694765-27694912,27694987-27695188,
           27695802-27695864,27695865-27696120,27697811-27697953
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 486 PFTLKDIFSLRFFFPVCKVYSRNFITADQIVSLSNDN 376
           P+  +  F++RF   + K+Y+ + ++ D++V L +DN
Sbjct: 64  PYEKQGNFNMRFKLTLNKLYAWSLVSYDRVVMLDSDN 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,444,977
Number of Sequences: 37544
Number of extensions: 343898
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)