Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k16
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   6.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 628 FTYSLILYDSFTENKVRLIH 687
           F Y L++YD F ++  R+ H
Sbjct: 331 FRYGLLIYDFFKDSSFRIQH 350


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 YQCLSMIILLLSWFDNKQCTVGG 183
           + CL   +L+L   D++ CTV G
Sbjct: 376 WSCLFFFMLILIGLDSQFCTVEG 398


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 YQCLSMIILLLSWFDNKQCTVGG 183
           + CL   +L+L   D++ CTV G
Sbjct: 429 WSCLFFFMLILIGLDSQFCTVEG 451


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 34  YSKKHVDFDDLTDHISDEKIR 96
           Y  KH+DFD  +D   D  I+
Sbjct: 41  YEWKHIDFDFGSDERRDAAIK 61


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 349 RHLPHSIAEALKKL 308
           RHLP S+ ++ KKL
Sbjct: 82  RHLPRSMQDSTKKL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,744
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)