Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1k12
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 175 4e-45
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 61 1e-10
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 60 3e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 54 1e-08
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 54 1e-08
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 49 6e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 48 1e-06
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 47 3e-06
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 43 4e-05
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.54
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.2
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 1.6
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 3.8
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.8
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 175 bits (426), Expect = 4e-45
Identities = 87/152 (57%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Frame = +3
Query: 156 RLP-RVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVI 332
RLP R+ + + + R YAKD++FG D RA +L GVD LA AV+VT+GPKGRNV+
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 333 LEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAI 512
++Q +GSPKITKDGVTVA+ V LKDKF+N+GA+LVQ+VA+ TNE AGDGTTTATVL RAI
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 513 AKEGFEKISKGANPIEIXRGVMLAXXAVXEKL 608
E ++ G NP+++ RG+ LA V E L
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL 162
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 60.9 bits (141), Expect = 1e-10
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = +3
Query: 240 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQ-SWGSPKITKDGVTVAKGVELKDKFQ 416
G + R G + D V T+GPKG + IL+ S G +T DG T+ K + L
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL----D 73
Query: 417 NIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXRGVMLAXXAV 596
N AK++ N++ ++E GDGTT+ V A + ++ ++ +P I G +A
Sbjct: 74 NAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTA 133
Query: 597 XEKL 608
+ L
Sbjct: 134 IDAL 137
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/111 (31%), Positives = 58/111 (52%)
Frame = +3
Query: 240 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 419
G D + +A+ V ++GP+G + IL G +T DG T+ +E++ +
Sbjct: 32 GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQI-- 89
Query: 420 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXRG 572
AKL+ ++ + ++E GDGTT VLA A+ ++ I KG +PI I G
Sbjct: 90 --AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADG 138
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/106 (28%), Positives = 58/106 (54%)
Frame = +3
Query: 246 DVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 425
+VR + +ADA+ ++GPKG + +++ G +T DG T+ K + + +
Sbjct: 19 EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV----LHPA 74
Query: 426 AKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEI 563
AK++ +++ + EAGDGTT+ +LA ++ + + KG +P I
Sbjct: 75 AKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVI 120
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 54.4 bits (125), Expect = 1e-08
Identities = 34/115 (29%), Positives = 55/115 (47%)
Frame = +3
Query: 240 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 419
G DVR + +A+ V ++GP G + +L G +T DG T+ + L D
Sbjct: 19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI---LSLLDVEHP 75
Query: 420 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXRGVMLA 584
G LV+ +A ++E GDGTT+ ++A + + E + +P I G LA
Sbjct: 76 AGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 48.8 bits (111), Expect = 6e-07
Identities = 29/107 (27%), Positives = 49/107 (45%)
Frame = +3
Query: 288 DAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEE 467
D + T+GP G + ++ G I+ DG T+ K +++ AK + ++A + E
Sbjct: 38 DTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHP----AAKTLVDIARAQDAE 93
Query: 468 AGDGTTTATVLARAIAKEGFEKISKGANPIEIXRGVMLAXXAVXEKL 608
GDGTT+ V A + +E + G + I RG A K+
Sbjct: 94 VGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKI 140
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 47.6 bits (108), Expect = 1e-06
Identities = 30/101 (29%), Positives = 48/101 (47%)
Frame = +3
Query: 282 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 461
L D + +GP G +L G+ K+TKDG + +++ QN A + A +
Sbjct: 28 LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQD 83
Query: 462 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXRGVMLA 584
+ GDGTT+ +L + K+ I +G +P I G LA
Sbjct: 84 DATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/102 (26%), Positives = 48/102 (47%)
Frame = +3
Query: 264 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 443
+Q +AD + +GP+ +L GS +T DG + + +E+ AK +
Sbjct: 25 IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHP----AAKSMIE 80
Query: 444 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXR 569
+A +EE GDGTT+ +LA I + + +P+ + R
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIR 122
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 42.7 bits (96), Expect = 4e-05
Identities = 27/109 (24%), Positives = 44/109 (40%)
Frame = +3
Query: 282 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 461
L++ ++GP G+N I+ +T D T+ + +E+ AKLV +
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHP----AAKLVVDATQQQE 93
Query: 462 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIXRGVMLAXXAVXEKL 608
E GD V + + I G P+EI +G +A E L
Sbjct: 94 NELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVL 142
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 29.1 bits (62), Expect = 0.54
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 321 RNVILEQSWGSPKITKDGVTVAK-GVELKDKFQNIGAKLV 437
R VI ++ S +T G T G+ELKD+F+ +G K++
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKVL 581
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 341 LFQNNVSTFWTHCNGYGIS*DVNALQHESSYISAKPHIFGI 219
++ N +S T +G+GI +++ + E SAK H+FGI
Sbjct: 225 IYPNTLSVLRTRASGFGIKIELDNITPELITKSAK-HVFGI 264
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 159 LPRVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAV 296
+P V++ + ++ Y+L+ F+ R+ V LQGV + AD V
Sbjct: 140 VPSVLKAPIFIY--YRLTNFFQNHRRYAKSVDEKQLQGVALTADEV 183
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 243 RQTSHLWHKILKVDMIYGEKQFDEQHEVDATFLKIVLILAVF 118
RQT+ +W + V F H +ATF ++L + F
Sbjct: 166 RQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIISF 207
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 5.0
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -2
Query: 436 TNLAPMFWNLSLSSTPLATVTPSFVIFGD--PQDCSR-----ITF-LPFGPIVTATASAR 281
T L P F NL SS+ T F+ D ++ SR I F + + P+V+
Sbjct: 129 TLLPPTFHNLIPSSSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVSPCGHT- 187
Query: 280 MSTPCSMRALTSAP 239
PC M+ALT +P
Sbjct: 188 FCGPCLMQALTQSP 201
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 385 ATVTPSFVIFGDPQDCSRITFLPFGPIVTATASARMSTPCSMRALTSAPNLTSL 224
A+V P P ++ L P+ A SAR S+ S ++ + P+L +L
Sbjct: 539 ASVRPITAAVFAPTKTKQLLTLSGDPVYLAAISARRSSVISNASIETGPSLRNL 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,622
Number of Sequences: 5004
Number of extensions: 39065
Number of successful extensions: 128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -