Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k10
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    51   7e-08
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    33   0.014
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    29   0.41 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   3.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.8  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    24   8.8  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    24   8.8  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    24   8.8  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 51.2 bits (117), Expect = 7e-08
 Identities = 27/75 (36%), Positives = 39/75 (52%)
 Frame = +1

Query: 169  ISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQ 348
            ++E +   IT +G +  PGK P  GE KLYL IE   EL V +A +E+ RL+ E +    
Sbjct: 940  VTELTGTSITTKGNFYLPGKNPEPGEEKLYLWIEGPSELVVNRAITELRRLLLEGINHSL 999

Query: 349  TSAHHMVNKARYKVL 393
               +      RY V+
Sbjct: 1000 EGGNKPSASGRYTVV 1014


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = +1

Query: 145 RSMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLI 324
           +S E L L  EY   G   R    +PG+   E E K Y+A E +  L        I R +
Sbjct: 263 QSDEYLYLCMEYCMGGEFFRALQRRPGRCLSENEAKFYIA-EVTAALEYLHLMGFIYRDL 321

Query: 325 KEELLKLQTSAHHMVN 372
           K E + L  S H M++
Sbjct: 322 KPENILLHESGHIMLS 337


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 196 TVRGTY-VQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELLK 342
           TV G Y VQ  KA  +  +KL  A +   E  V + K+E  +++KEE LK
Sbjct: 44  TVGGVYHVQQKKASHKRSKKLK-AHQDKAESKVNEGKNEAAKVVKEEDLK 92


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 338 RSSSLMSRVISDLALATASSCELSMARYSLRSPSGGALPGWTYV 207
           R + L  R+    A A  SS    +  Y +    GG L GW Y+
Sbjct: 179 RRTELARRLAIFYAAANVSSAFGGLLAYGVFHIKGGKLQGWQYL 222


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 272  LSMARYSLRSPSGGALPGWTYVPRTVI 192
            LS+    L SPS    P W  +PR VI
Sbjct: 1895 LSVLTARLSSPSDSTFPLWAKLPRLVI 1921


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 HLIHNKLQNFISSFVDHVMGRGLEFEE 334
           +L++    N  SSF+  +  R LEF+E
Sbjct: 319 NLLYEPFHNIYSSFIKPIDDRRLEFDE 345


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 241 GERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQTSAHH 363
           G+RK+++      E++ A ++  I +L+K+ L+  + +  H
Sbjct: 18  GKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMH 58


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 241 GERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQTSAHH 363
           G+RK+++      E++ A ++  + +LIK+ L+  + +  H
Sbjct: 18  GKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMH 58


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 223 GKAPPEGERKLYLAIESSQELAVAKAKSEITRL 321
           G AP   ++K     +  QELAVA+A   I+++
Sbjct: 9   GNAPSSEDKKSIFMKQIRQELAVAQAGELISKI 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,676
Number of Sequences: 5004
Number of extensions: 25047
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)