Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k08
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    38   0.001
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    35   0.010
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   5.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   5.9  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   7.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 47/177 (26%), Positives = 67/177 (37%), Gaps = 10/177 (5%)
 Frame = +3

Query: 177  THASSLLVKQSISCETPMGVRQNPWTPTKRRGPIAAEASSPGPAVV-SLP------SLIG 335
            TH SS  + Q I   T +G      T   R      +AS P PA   S+P      +++ 
Sbjct: 924  THQSSTGLTQEI---TQLGSNMRLPTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILS 980

Query: 336  KP---PPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKGRALGPAASLHGR 506
             P   PP+   P AP  +      P A +A+  P P   +         A  P   +   
Sbjct: 981  SPTSEPPKDHPPSAP-LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPST 1039

Query: 507  WPPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPV 677
             PP  + PT  P   + +  A +     PA S  +  S+P P    P P    +PPV
Sbjct: 1040 APPVPI-PTSTPPVPKSSSGAPSAPPPVPAPSSEIP-SIPAPSGAPPVPAPSGIPPV 1094


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 312  VSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAK 467
            V L S+   PP  +   + P  +  +K+DPL +I +A P P +    G T+K
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSK 1986


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 TSRSISPFPYR*TASRIEETKSSSFYFR 385
           T+ SI PFP    +S  +E KSS+F FR
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFR 209


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
 Frame = +3

Query: 303  PAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKGRALG 482
            P    +PS+  +PP       AP+ T        A++    P PA    +  +A   +  
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV----PSPAPPAPQHPSAAALSSA 1548

Query: 483  PAASLHGRWPPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLP---GPGSKTPAP 653
            PA +      P R  P  AP   EP +  +A+ + APA ++G   S     GP + + +P
Sbjct: 1549 PADNS----MPHRSSPY-AP--QEPVQKPQAINNIAPATNLGTSQSFSPRMGPVNNSGSP 1601


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +3

Query: 225 PMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPP-ESRKPRAPAFTFGQ 389
           PMG    P  P     PIA    +  PA   LP     PPP  +  P AP  +  +
Sbjct: 440 PMGAPAAP--PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 213 SCETPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQK 392
           S E    ++ NP + +K +   +   +  GP ++S P +I    P  +  +  +    +K
Sbjct: 241 SSEMDSNLQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKS----KK 296

Query: 393 LDPLANIAKAGPGPASYNT 449
             P + ++ + P  ASYN+
Sbjct: 297 ALPTSPLSSSSP-DASYNS 314


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 591 PAFSIGLRVSLPGPGSKTPAPNTYSMPP 674
           PA++ G R      GSKTPA N+ S  P
Sbjct: 828 PAWNTGSRTPAWNSGSKTPAWNSGSRTP 855


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 246 GSGERPSESHTKLI 205
           GS E+P+ES+TKLI
Sbjct: 246 GSDEKPTESYTKLI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,616
Number of Sequences: 5004
Number of extensions: 61062
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)