Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k05
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0255 - 13522303-13522337,13524027-13524126,13524247-135244...    77   2e-14
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    28   8.0  

>06_02_0255 -
           13522303-13522337,13524027-13524126,13524247-13524468,
           13524608-13524695,13525507-13525562
          Length = 166

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = +3

Query: 228 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 404
           S +++W  IYP YLNSKKT+AEGRR+       +PT  EI D      +   +E +K Y 
Sbjct: 69  SSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYP 128

Query: 405 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRES 506
           R    +    GR+RVQ+K DDG+PVNP   T  +
Sbjct: 129 R----DFFQVGRVRVQLKKDDGSPVNPAIKTNST 158


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 474 PVNPEFPTRESVMKYIGESIP 536
           P NP  PTR  V   IG S+P
Sbjct: 334 PTNPSLPTRPEVFGAIGASVP 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,838
Number of Sequences: 37544
Number of extensions: 328866
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)