Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k05
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X12791-1|CAA31280.1|  144|Homo sapiens protein ( Human mRNA for ...   138   1e-32
BC010947-1|AAH10947.1|  144|Homo sapiens signal recognition part...   138   1e-32
BC017830-1|AAH17830.1|  110|Homo sapiens SRP19 protein protein.       113   6e-25
X77548-1|CAA54673.1|  614|Homo sapiens Ret fused gene protein.         30   6.8  
L49399-1|AAC37591.1|  614|Homo sapiens ARA70 protein.                  30   6.8  
BC012736-1|AAH12736.1|  575|Homo sapiens NCOA4 protein protein.        30   6.8  
BC001562-1|AAH01562.1|  614|Homo sapiens NCOA4 protein protein.        30   6.8  
AL450342-6|CAI14479.1|  575|Homo sapiens nuclear receptor coacti...    30   6.8  
AL450342-5|CAI14478.1|  614|Homo sapiens nuclear receptor coacti...    30   6.8  
AL162047-1|CAB82390.1|  614|Homo sapiens hypothetical protein pr...    30   6.8  

>X12791-1|CAA31280.1|  144|Homo sapiens protein ( Human mRNA for
           19kD protein of signal recognition particle (SRP). ).
          Length = 144

 Score =  138 bits (335), Expect = 1e-32
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
 Frame = +3

Query: 228 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 404
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 405 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 560
           RE ++++ YRGR+RVQ+K +DG+    +FP+R+SVM Y  E IPKLKTR  +
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121


>BC010947-1|AAH10947.1|  144|Homo sapiens signal recognition
           particle 19kDa protein.
          Length = 144

 Score =  138 bits (335), Expect = 1e-32
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
 Frame = +3

Query: 228 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 404
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 405 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 560
           RE ++++ YRGR+RVQ+K +DG+    +FP+R+SVM Y  E IPKLKTR  +
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121


>BC017830-1|AAH17830.1|  110|Homo sapiens SRP19 protein protein.
          Length = 110

 Score =  113 bits (272), Expect = 6e-25
 Identities = 53/91 (58%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = +3

Query: 228 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 404
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 405 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPT 497
           RE ++++ YRGR+RVQ+K +DG+    +FP+
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPS 100


>X77548-1|CAA54673.1|  614|Homo sapiens Ret fused gene protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>L49399-1|AAC37591.1|  614|Homo sapiens ARA70 protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>BC012736-1|AAH12736.1|  575|Homo sapiens NCOA4 protein protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>BC001562-1|AAH01562.1|  614|Homo sapiens NCOA4 protein protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>AL450342-6|CAI14479.1|  575|Homo sapiens nuclear receptor
           coactivator 4 protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>AL450342-5|CAI14478.1|  614|Homo sapiens nuclear receptor
           coactivator 4 protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


>AL162047-1|CAB82390.1|  614|Homo sapiens hypothetical protein
           protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 YLNSKKTLAEGRRLPKSVCVENPTHQE---IRDVLLATGLRVGVENKLYSRECSKEMLYR 434
           +L +KK L+    + +   V+N  HQ+   + +V  A          +    C KE LY+
Sbjct: 372 HLEAKKPLSTPSMVTEDWLVQN--HQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYK 429

Query: 435 GRIRVQIKNDDGAPVNPE 488
             ++ + K+ +G PV P+
Sbjct: 430 WLLKKEGKDKNGMPVEPK 447


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,323,954
Number of Sequences: 237096
Number of extensions: 1882941
Number of successful extensions: 3418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3404
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)