Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k04
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81530-6|CAB04310.1|  329|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   3.0  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   3.0  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   4.0  
Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol poly...    28   7.0  
Z77661-4|CAB01183.1|  264|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81530-6|CAB04310.1|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.8 protein.
          Length = 329

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 401 RLSFARLVIHGEIACSLQRCLWTK--YKCYNLYCLFLVRIFYRWTFGRVVYVSVNLIGIA 228
           R +F R  IH  I+  L +C++TK  Y C      F+ RI+   T  R+      L   +
Sbjct: 146 RFAFIRDPIHRFISLYLDKCIYTKSCYNCGTNMACFVQRIYE--TLNRIKSNRRRLHEAS 203

Query: 227 SILQHITEI 201
           SI QH+  +
Sbjct: 204 SIEQHVAPL 212


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
            protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 54   CFGSITCHLPQYASTPSNKIDQFCVLAESCIHDTIAVCGRMGEEKRTFLDLCDMLEYACD 233
            CF    C +P  +S P     Q C +    I   + VCG  G    T+ +LC++  +AC+
Sbjct: 845  CFHGAKC-VPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGT---TYSNLCELKMFACN 900


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 177 GEEKRTFLDLCDMLEYACDSNQIYTHIDDTPECPSIKNP 293
           G EKRTF + CD+     +S+ + +H  D    P++  P
Sbjct: 507 GTEKRTFAERCDIEYEDIESSTVSSHFRDQEWFPAVLFP 545


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 54  CFGSITCHLPQYASTPSNKIDQFCVLAESCIHDTIAVCGRMGEEKRTFLDLCDMLEYAC 230
           CF    C +P  +S P     Q C +    I   + VCG  G    T+ +LC++  +AC
Sbjct: 784 CFHGAKC-VPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGT---TYSNLCELKMFAC 838


>Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical
           protein R01H10.7 protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 365 SLHVSQAERNS-DAKLFAKKGS*LKYVFKYHYGNALSLTRDLEREMVLFVKEHARKRRTT 541
           +LH+   E NS D + F   GS     ++YH G  L L   L+     F     +KR+  
Sbjct: 298 NLHIHSYEINSSDKRDFITAGSASAIPYRYHNGGILKLYSQLDVPSYNFDYTFWKKRQAL 357

Query: 542 LE 547
           L+
Sbjct: 358 LD 359


>AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol
           polyphosphate-4-phosphataseprotein.
          Length = 793

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 365 SLHVSQAERNS-DAKLFAKKGS*LKYVFKYHYGNALSLTRDLEREMVLFVKEHARKRRTT 541
           +LH+   E NS D + F   GS     ++YH G  L L   L+     F     +KR+  
Sbjct: 279 NLHIHSYEINSSDKRDFITAGSASAIPYRYHNGGILKLYSQLDVPSYNFDYTFWKKRQAL 338

Query: 542 LE 547
           L+
Sbjct: 339 LD 340


>Z77661-4|CAB01183.1|  264|Caenorhabditis elegans Hypothetical
           protein F40G12.5 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 108 KIDQFCVLAESCIHDTIAVCGRMGEEKRTFLDLCDMLE 221
           K+ + C  AE+C+HD+   C     E+    + CD+LE
Sbjct: 149 KVLKMCKNAETCVHDS---CKFTNFEREEIENSCDVLE 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,414
Number of Sequences: 27780
Number of extensions: 325899
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)