Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k02
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    28   1.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   2.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.6  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   4.8  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    25   8.3  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/87 (31%), Positives = 48/87 (55%)
 Frame = +2

Query: 464 VVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQAAQSLRPRLDSLSYLVLN 643
           +V LDL+ N+LT   E+   L + P++  LNL+ N+++            L  L  LVL+
Sbjct: 358 LVSLDLSGNELT---EIPYALGELPQLCSLNLASNKITG---CRTFYHISLSHLQILVLS 411

Query: 644 STYVSWPSVHSLLKALPALEELHLSLN 724
             +++  S+ S L+ +P+LE+L +  N
Sbjct: 412 RNHLT--SL-SGLENVPSLEKLDIRDN 435


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 187 LKSYKIFTVSIFLHKQLITFFSKCAIKDFH 98
           L+ +   T ++   KQ+I FFS   + +FH
Sbjct: 524 LRDFSDLTTTVLTQKQVIPFFSSMELANFH 553


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 111 SKISIRSPKHTVIFYFKSIVKSWKYSGHTINLASYCF 1
           SK S+ S K  V+F FK++    K     I    YCF
Sbjct: 46  SKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCF 82


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 461 DVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQA-AQSLRPRLDSLSYLV 637
           DV+ + L++N L     V  + +  P++  L+L+ NR+++       S + +L  L  LV
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELV 274

Query: 638 L 640
           L
Sbjct: 275 L 275


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 593 AQSLRPRLDSLSYLVLNSTYVSWPSVHSLLKALPAL 700
           A SL    DS  YL + S YV  P  H+L + +PAL
Sbjct: 254 AISLYEGTDSEKYLKI-SKYVENPRSHALAEGVPAL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,250
Number of Sequences: 5004
Number of extensions: 51158
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)