Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k02
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.019
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 30/91 (32%), Positives = 46/91 (50%)
 Frame = +2

Query: 455 CADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQAAQSLRPRLDSLSYL 634
           C+D+ ELDL+ N+LT   +    L     ++ L+L  NR+S       S R  LD L+ L
Sbjct: 430 CSDLKELDLSGNELTSVPDA---LRDLALLKTLDLGENRISNFYNG--SFR-NLDQLTGL 483

Query: 635 VLNSTYVSWPSVHSLLKALPALEELHLSLNE 727
            L    +   S   +L  LP L+ L+L+ N+
Sbjct: 484 RLIGNDIGNLS-RGMLWDLPNLQILNLARNK 513



 Score = 26.6 bits (56), Expect = 0.24
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +2

Query: 458 ADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQAAQSLRPRLDSLSYLV 637
           AD+  LDL+ N++T  QE   +L+   +++ L+L  N   A ++ A      L  L    
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLD-LRQLQELHLQRN---AIVEIAGDALTGLTVLR--T 265

Query: 638 LNSTYVSWPSV-HSLLKALPALEELHLSLN 724
            N++Y S  S+   L  +   L E+HL+ N
Sbjct: 266 FNASYNSLDSLPEGLFASTRDLREIHLAYN 295


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 211 NSILKLFRLKSYKIFTVSIFLHKQLITFFS 122
           N IL +      K+F     L +  ITFFS
Sbjct: 98  NQILHILWTSYKKVFMKDNILRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 211 NSILKLFRLKSYKIFTVSIFLHKQLITFFS 122
           N IL +      K+F     L +  ITFFS
Sbjct: 81  NQILHILWTSYKKVFMKDNILRQYFITFFS 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,545
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)