Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k01
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.63 
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   1.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   2.5  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   3.4  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   4.4  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   5.9  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   7.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   7.8  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 165 LDSTLPTMSRRESTIE-VKDYIDTKNSSGDSKAVKTKIQEENNNEIDELSK-----EFTE 326
           +++TL   +  +ST E V    DT+N S   +  + K   E ++ +DEL K     E  +
Sbjct: 595 IENTLKGKTNSQSTSEFVSPISDTENGSSSQQVSEAKDIVEPSDVLDELQKFDLLPENDD 654

Query: 327 MGCIVDAVKRPPNVCVETCVYESKDDEKT 413
                 A    P + +   +YE K +EKT
Sbjct: 655 NFQTFQAFYGGPPIILSPNLYEKKLNEKT 683


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 323 REFFRQFIYFVIVLFLYFSFYSF 255
           R +FR F+ F+ + FL+ SF +F
Sbjct: 83  RSWFRAFLSFLSICFLFISFLNF 105


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 210 EVKDYIDTKNSSGDSKAVK-TKIQEEN-NNEIDELSKEFTEMGCIVDAV 350
           +V + + T  S+G    +K  +IQ  N NN+IDEL+  F+++   +D+V
Sbjct: 407 DVDELLHTIPSNGAVFEMKINQIQIFNDNNDIDELTMTFSDLDIFMDSV 455


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 132 TCSNYTFKYLLKLSQFLTNLFTSQKISQNLQFTNTY 25
           TCS Y+F+  L   QFL+ L  S+ +  NL+ +  Y
Sbjct: 62  TCSRYSFRDKLTSFQFLSWLI-SEDVHSNLEISPYY 96


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 210 EVKDYIDTKNSSGDSKAVKTKIQEENNNEIDELSKE 317
           E  DY        D + +K  I+E N  E+DEL +E
Sbjct: 218 EAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYRE 253


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 183 TMSRRESTIEVKDYIDTKNSSGDSKAVKTKIQEENNNEIDELSKEFTEM 329
           T+ RR+     K    TKN +  +K        +NN   ++LSK ++++
Sbjct: 19  TIERRKQLARSKKVYGTKNRNSHTKNKLESGTNDNNKNKEDLSKLYSDV 67


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 492 ETVERVTKSETSRGPSQICVNLTKSQSLMSTNKPNSISGRSTNYGSI 632
           + + R++ S  + G  +  +N++ S+S +  N   + +    NYGSI
Sbjct: 29  QQIHRLSHSPMAEGFHKPKLNISPSESNLPNNVAENTTDTPVNYGSI 75


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 412 PKDITRMTKTLIQMSSKMIRVKR 480
           PKDITR+T  ++ +S K     R
Sbjct: 318 PKDITRLTNAILSLSMKQFERDR 340


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +3

Query: 168 DSTLPTMSRRESTIEVKDYIDT-----KNSSGDSKAVKTKIQEENNNEIDELS 311
           DSTL + S  +S  +    +D      KNSS   + + T      N EID  S
Sbjct: 41  DSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSSS 93


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 489 IETVERVTKSETSRGPSQICVNLTKSQSLMSTNKPNS 599
           I  V+R+ K++ S GP  +  +L K ++  +T+K +S
Sbjct: 40  IRMVDRIRKNKLSSGPQHLLSHLQKEEN-SNTSKASS 75


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 165 LDSTLPTMSRRESTI--EVKDYIDTKNSSGDSKAVKTKIQEENNN 293
           LD T  T  + +ST    VK   +  NS  D +  +TK  EENN+
Sbjct: 359 LDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNS 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,589
Number of Sequences: 5004
Number of extensions: 44655
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)