Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1k01
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    32   0.49 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     30   1.5  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   8.0  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
 Frame = +3

Query: 168 DSTLPTMSRRESTIEVKDYIDTKNSSG---DSKAVKTKIQEENNNEIDELSKE--FTEMG 332
           D+    +SR    +  KD  +    SG    ++ V+TK+Q  ++N +   S +   T  G
Sbjct: 49  DTRAKRVSRVPKKLVKKDSKENSPRSGRINSNRQVQTKLQYISSNNLQSKSPKPNKTSDG 108

Query: 333 CIVDAVKRPPNVCVETC----VYESKDDEKTERYYTDDE 437
                + +P  V V +C    V E  DD+  E   TDD+
Sbjct: 109 AKTIEITKPDTVTVPSCPSSEVSEEMDDKPIENIVTDDK 147


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +3

Query: 165  LDSTLPTMSRRESTIEVKDYIDTKNSSGDSKAVKTKIQEENNNEIDELSKEFTEMGCIVD 344
            +++TL   +   + +EV+      +     + + TK+++EN   +DE +  FTE G  ++
Sbjct: 3694 VEATLKNEASTPTNVEVETVDLQHDKFYKREPIATKLEDENETIVDE-NTVFTEEGIPME 3752

Query: 345  AVKRPPNVCVETCVYESKDDEK 410
             V        E  + E K+D K
Sbjct: 3753 NVSLKTIETGEIIMSEDKEDNK 3774


>05_07_0328 +
           29286109-29286120,29286982-29287146,29288427-29288589,
           29288625-29288903,29289047-29289122,29289725-29289787,
           29292116-29292164,29292413-29292504,29293017-29293068,
           29293209-29293271,29293382-29293431,29293941-29294016,
           29294444-29294656,29294763-29294869,29294966-29295074,
           29295489-29295689,29295773-29296033,29296154-29296171,
           29296287-29296397,29296755-29297030,29297108-29297382,
           29297814-29298165,29298371-29298655,29298715-29299261,
           29301658-29301781,29301871-29301946,29302062-29302136,
           29302300-29302353,29302833-29302892,29302977-29303093,
           29303228-29303361,29303480-29303682,29303879-29303976,
           29304358-29304461,29304537-29304702,29304803-29304925,
           29305047-29305129,29305217-29305358,29305523-29305549,
           29305784-29305854,29305930-29306518
          Length = 2046

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 246 GDSKAVKTKIQEENNNEIDELSKEFTEMGCIVD 344
           GDS+ VK  +Q + N    E+ + +  +G IVD
Sbjct: 520 GDSQLVKLNLQADPNGSYVEVLERYVNLGPIVD 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,477
Number of Sequences: 37544
Number of extensions: 248705
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)