Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j23
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   1.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   4.0  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   9.3  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 65  HFVSKTLKLVRLFVRGGSTLI*ERGLCTNE 154
           H    T+ + R+F +GGS    ERGLC  E
Sbjct: 433 HLSGMTMGMRRMFTQGGSYSAQERGLCRLE 462


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 65  HFVSKTLKLVRLFVRGGSTLI*ERGLCTNE 154
           H    T+ + R+F +GGS    ERGLC  E
Sbjct: 433 HLSGMTMGMRRMFTQGGSYSAQERGLCRLE 462


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 529 VLNKQTVINYSLIIRRVVPSKLTCTVFIQNSYVTFQTNTELNH*W 395
           VL K+  I Y   + RV P KL     +++  +     + LNH W
Sbjct: 644 VLPKKVKIAYMKAVSRVHPDKLPQQTSVEHQLIAESAFSILNHAW 688


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 287 LSSQYTTTLLRKNTSQKFIARKLFKVTKSVASRRRRCPLVAGFPTRSYITPALRST 120
           L S++  +LL K+ S     ++  KVT  +A       L++ FPTR +  P +  +
Sbjct: 194 LLSRWIHSLLIKSISYAQTEKQEAKVTPLLAIINMSLVLLSAFPTRRFAHPVIEDS 249


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 571 IKQILKKHQMKIKHVLNKQ--TVINYSLIIRRVVPSKLTCTVFIQNSYVTFQTNTELNH* 398
           +K++L K     + +LN +  +V+ YSL  R++    L  T    N+ +   T     H 
Sbjct: 17  LKRLLMKRNSFRRPLLNMRCNSVLQYSLEKRKLTVQDLKDTRMELNNMIRILTEAMAAHE 76

Query: 397 WT 392
           WT
Sbjct: 77  WT 78


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 628 DC--ESFLIRCYKNVFQKNCLIKQILKKHQMKIKHVLNKQTVINYSLIIRRVVPSKLTC 458
           DC  E   +RC+  +  ++C++ +  KK    ++   N +  +N +L+I   V S+  C
Sbjct: 87  DCHAEILALRCFNRLLLEHCILIKESKKDTWLLEVADNGKFTLNSNLLIHLYV-SECPC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,967
Number of Sequences: 5004
Number of extensions: 64249
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)