Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j23
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0264 + 8404879-8405106                                           30   2.4  
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703...    29   3.2  

>02_02_0264 + 8404879-8405106
          Length = 75

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 277 SIQPHFFVRTPHKSLSQENSSK*PSRSPVAGDAARLSLASQLV 149
           S+ PH   RTP+  L   +SS  P+ +PV   +    L S +V
Sbjct: 22  SVPPHAPSRTPYPPLPSSSSSSTPTPTPVLAVSREYRLTSSMV 64


>01_05_0540 +
           23069954-23070103,23070170-23070251,23070298-23070355,
           23071276-23071318,23072262-23073341,23073448-23073509,
           23073759-23073855,23074703-23074984,23075073-23075147,
           23075223-23075276,23075373-23075515,23076567-23076858
          Length = 805

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = -3

Query: 571 IKQILKKHQMKIKHVLN---KQTVINYSLIIRRVVPSKLTCTVFIQNSYVTFQTNTELNH 401
           +K++LKKH+M+++ V N   ++ ++N   II+ V P K       +   +TFQ + EL  
Sbjct: 655 VKRLLKKHEMQLQAVANALLEKEILNADEIIKVVQPYK-------REPQITFQ-DKELAV 706

Query: 400 *WTAR 386
            W+ R
Sbjct: 707 NWSCR 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,735
Number of Sequences: 37544
Number of extensions: 366824
Number of successful extensions: 772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)