Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j23
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    37   0.014
AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 depende...    35   0.076
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    28   8.7  

>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
 Frame = -3

Query: 589 FQKNCLIKQILKKHQMKIKHVLNKQTVINYSLIIRRVVPSKLTCTVFIQNSYVTFQTNTE 410
           FQ N L    LKKHQ+ IK+ L + ++ N++ I   +    L   +FI    +       
Sbjct: 103 FQFNSLGLCFLKKHQI-IKNTLRRNSIPNWAYIAFIISTLPLVALIFISVLQIGVSKEKS 161

Query: 409 LNH*WTART*QPRNIISYKTKFANL----TNIFAIKLYFVSRTGSCL 281
           +     +RT  P+  + + +K +NL    +N++A+ + F+S  G CL
Sbjct: 162 IEF---SRTNYPQYGVLF-SKISNLMFFDSNLWAVGVLFISGFGGCL 204


>AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 5 protein.
          Length = 363

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -3

Query: 613 LIRCYKNVFQKNCLIKQILKKHQMKIKHVLNKQTVINYSLIIRRVVPSKLT 461
           +I C  N+F  +    QIL ++  +I+H +     +NYSL++ R++ S LT
Sbjct: 63  VIDCDINLFDNSKCTHQILARNLYRIEHRIVFDVGVNYSLLMNRLLVSNLT 113


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 353 FIAYDVSRLLCTRGPLMV*FSVCLESYITILNKHSASQFTWNH 481
           F  YD  R    RG L V   V   SY+  LN+H  +QF +N+
Sbjct: 398 FSGYDYCRFPKGRGNLSV--MVIGNSYVLNLNEHVRAQFNYNY 438


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 353 FIAYDVSRLLCTRGPLMV*FSVCLESYITILNKHSASQFTWNH 481
           F  YD  R    RG L V   V   SY+  LN+H  +QF +N+
Sbjct: 398 FSGYDYCRFPKGRGNLSV--MVIGNSYVLNLNEHVRAQFNYNY 438


>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 213 SNQVGRQSPETLPACRWLPNSFVHNPRSQINVEPPLTNKR 94
           +N +GR SP+  P    LP S  H P +  N+E  LT++R
Sbjct: 132 ANGIGRISPQRTPQPTVLPTSPFHVP-TMNNLEQVLTHQR 170


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 213 SNQVGRQSPETLPACRWLPNSFVHNPRSQINVEPPLTNKR 94
           +N +GR SP+  P    LP S  H P +  N+E  LT++R
Sbjct: 159 ANGIGRISPQRTPQPTVLPTSPFHVP-TMNNLEQVLTHQR 197


>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 616 FLIRCYKNVFQKNCLIKQILKKHQMKIKHVLNKQTVINYSLIIRRVVPSKLTCTVFIQ 443
           F I+CY ++ ++  L+ Q  +K Q ++ + L  QTVI   L +     + + C  F++
Sbjct: 222 FGIKCYSSLREQGALVSQNTQKLQNQLFYSLVIQTVI--PLFLMHFPVAAMYCFTFLE 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,659
Number of Sequences: 27780
Number of extensions: 359278
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)