Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j18
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    29   0.52 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.90 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   4.8  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   6.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.4  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   8.4  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 299  YYDSNGDVKPVIEVTEPPVSKYAADYEIAKAEAKYNNKFLPSKIETDAMYE 451
            Y D  G V+ ++      V   A D    +    YN++ L S + TD +Y+
Sbjct: 946  YVDKEGTVEDILRQVTQKVPLNAEDASRLRLYEVYNHRILKSHLPTDGIYD 996


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
 Frame = +2

Query: 140 NSSPVQSGYMYSQVDNYPGTLSSFGIGYGGATHNEPAVNDRKTDGNIYPPEYNYYDSNGD 319
           N +PV   Y+     + PG  +++ + Y  A   +  V++  T  +I P           
Sbjct: 394 NVTPVNENYLQRFFGDQPGQATAYVLFYTAADEEDDDVSEVDTKESIKPMSIPSQLKQES 453

Query: 320 VKPVIEVTEPPVSKYAADYE-----IAKAEAKYNNKFLPSKIETDAMYERLKSM 466
           V+ V  ++  P S     Y      +A   ++Y++K L   I + + ++R  S+
Sbjct: 454 VE-VSNLSSTPRSNSTITYPDMDPMVASFSSQYSHKTLDRDINSRSYFDREPSL 506


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 308 SNGDVKPVIEVTEPPVSKY 364
           S GD++PV E T PP++ +
Sbjct: 161 SGGDIEPVNEFTSPPLNSH 179


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 141 THHPYSPDTCTVKWIIILE 197
           +HH  S  T T KW++++E
Sbjct: 161 SHHRISSITSTAKWVLVIE 179


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 68  CLSRVAAELHSLQHHMYVSRKSRSNSSPVQSGYMYS 175
           CLS++A + H  +  +Y+  K  S  S       YS
Sbjct: 771 CLSKLAFQCHETKRFLYIDEKQSSEISFTSGELEYS 806


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 464 MMYYHPPEGYKEMNTGY 514
           + YY+PP  + ++NTG+
Sbjct: 42  LSYYYPPPLFSDLNTGF 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,024
Number of Sequences: 5004
Number of extensions: 63401
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)