Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1j16
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 37 0.003
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.82
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 28 1.4
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 1.9
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 27 3.3
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.7
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 7.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.7
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 36.7 bits (81), Expect = 0.003
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 221 LREKEKGDWKLLCCEEKKALYRASFCQ----TFAEFQHYTGEWKLILGYLLIALSFPFWA 388
L ++K W L EEKKA Y +F + F+ T W + G + + +
Sbjct: 58 LYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQKTVFWGTVAG---LTIGVVLFG 114
Query: 389 MIFNHYYVYEPLPESLSKESQKAQLRRMLELRVNPIDGLSSK 514
+I P P ++++E Q+ M E ++NPI G +S+
Sbjct: 115 LIRTQA---APSPRTMTREWQEKSNEYMKENKINPISGEASE 153
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 350 GYLLIA-LSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRRMLELRVNP 493
GYL + L P W + + YY+ + + K + +L ++LE +P
Sbjct: 73 GYLNVTDLVLPLWCEVQHEYYLLRRIKKKTPKMERGIKLHQILEYETSP 121
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 195 KKTPKISGPCARKRR-----EIGNSSAAKRRKRYIVLLSVRPSPNFST 323
++ P +S P RR ++ NS++ KRR ++ + P PN ST
Sbjct: 244 RRNPLLSSPKTPLRRSFSKSKVRNSNSTKRRNFISLISMISPRPNLST 291
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 249 NSSAAKRRKRYIVLLSVRPSPNFSTIQENGNSSWD 353
NSS +K+R R LL + PS N S + N+ W+
Sbjct: 69 NSSTSKKRPRAEDLLVIEPSQN-SLVPSTQNNEWN 102
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 401 HYYVYEPLPESLSKESQKAQLRRMLELRVNPIDGLSSKWDYD 526
+YY + P+ LS ESQ A + R +L VN L+ K+ +D
Sbjct: 365 YYYASDSCPKDLSSESQLAFVER-CKLIVNDALILAKKFHFD 405
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 344 ILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRRMLELRVNPIDGLSSKWDY 523
+L +L L+F A+ Y + EPLP+SL K L+ EL + +G+ +
Sbjct: 808 VLNFLQDLLAF---ALHTPPYSLIEPLPDSLLKSLADLLLKNSQELYIILFNGMVFTFPR 864
Query: 524 DN 529
DN
Sbjct: 865 DN 866
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 299 QTFAEFQHYTGEWKLILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLR-RML 475
Q F F +TG + ++L L+FP+ N ++ PLP S E L+ ++L
Sbjct: 724 QQFLVFLTFTG----MTLFILYQLTFPYGVAKDNSSFIDTPLPHSCEMEKSLNVLQHKVL 779
Query: 476 ELR 484
+L+
Sbjct: 780 QLQ 782
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 679 NNNTNYFYYKQKIYLILCHKLHFKLLTKRNYISLLR-RIVVPKHF 548
+N +YF K I+ I H+L+ KLL LLR R +P HF
Sbjct: 633 SNQNSYFPLKVAIFWINIHQLYIKLL------KLLRLRQNIPIHF 671
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 482 VTPASSSIEPFVTLWTAIREEVHIHNSG*ISL 387
++P+S I +T+ TAIR+ NSG S+
Sbjct: 16 ISPSSLVINEIITVVTAIRKTTRWRNSGVASI 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,874
Number of Sequences: 5004
Number of extensions: 63883
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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