Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j16
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069           30   2.0  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   2.6  
02_02_0640 - 12528075-12528363,12531326-12532311                       28   6.0  
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371     28   7.9  
07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362     28   7.9  

>10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069
          Length = 117

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 93  IDVGSGTETGSVMASTEWPITRTKRNFPFQL*DS-KKTPKISGPCARKRREIGNSSAAKR 269
           ++V   TE  +  A++ +  T    NF F L      TP +   C  K  ++   SA   
Sbjct: 8   VEVACETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGL 67

Query: 270 RKRYIVLLSVRPSPNFST 323
           R R      +RPS + S+
Sbjct: 68  RHRPAASYRIRPSSSLSS 85


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 219 PCARKRREIGNSSAAKRRKR 278
           P ARKRR++ + S +K+RKR
Sbjct: 879 PAARKRRKVNSGSTSKKRKR 898


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 295 ERSTI*RFLLFAAEEFPISLLFLAQGPDIFGVFFESHSW 179
           ER  +    + +AE+  ++ +F+  G DIF   F S+SW
Sbjct: 299 ERERLGPVAVISAEDGRVTEVFMLDGHDIFRYNFSSNSW 337


>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
          Length = 437

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 157 GRSAISLSSCEIQRKHQRYLGLARER-EGRLETPLLRREESVISCFFLSDLRRISALYRR 333
           GRS    SSC+ Q+KH    G  R R E    +P + ++   +   F S ++ +S +   
Sbjct: 210 GRSLDVASSCKRQKKHSN--GTKRSRTESNFPSPRMLKD---VHSHFQSSIQHVSTMVTA 264

Query: 334 ME 339
           ME
Sbjct: 265 ME 266


>07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 284 RASFCQTFAEFQHYTGEW---KLILGYLLIALSFPFW 385
           R+ + +TF  F+  TG W   +LI+ +++  L FP+W
Sbjct: 74  RSPYGETF--FRRPTGRWSDGRLIVDFIVERLGFPYW 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,145
Number of Sequences: 37544
Number of extensions: 390604
Number of successful extensions: 1097
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)