Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j09
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    31   0.24 
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    29   0.97 
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   2.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.2  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    27   2.2  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    26   5.2  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   9.0  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 206 MLKTAIRGRVACVLPT-GAISPKQQFISIKSVYIPVLN 316
           +L  A+     CV+P+ G + PK++FIS + V IP  N
Sbjct: 120 LLDVALANPKDCVVPSSGLLMPKEEFISNEEVGIPATN 157


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 614 EIFFFKEGAVVFWNCSELEASNVL 685
           EIF F  G VVFWN S  +  ++L
Sbjct: 240 EIFVFSYGVVVFWNFSLSQEKDIL 263


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 305 PVLNQLSRRFRSSDAIQPTAALENASIPLKKKIVHKKSIAENLSQKEGHFLTLAYATANS 484
           P L+   +   SS A++ T  L+N       K  +K+  AENL+  +   L L   T  S
Sbjct: 26  PRLDNFFKTNTSSPALKDTQVLDNKENNSVSKF-NKEKWAENLTPAQRKLLQLEIDTLES 84

Query: 485 YDLKALKEALVE 520
               ALK+  ++
Sbjct: 85  SWFDALKDEFLK 96


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
 Frame = +2

Query: 227 GRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQPTAALENASIPLKKKIV 406
           G +  ++PT +     QF+  ++ Y  V N LS+   +   +      E AS  L   + 
Sbjct: 101 GSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSETEPKMPSYMDDEEASDSLPLSLS 160

Query: 407 HKKSIAENLSQKEG-HFLTL--AYATANSYDLKALKEALVEQKLYEP 538
            +   ++  +QK   H LT+   YA  N  +       L  +K YEP
Sbjct: 161 SQSLSSQVTNQKPAPHRLTMRERYAANNLTNGLQFTLPLSSRKTYEP 207


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 551 TVEIGNVVVANAVYNIGSEQ-REIFFFKEGAVVFWNCSELEAS--NVLEFVKPYELESYP 721
           TVE G+      ++N G+ +   +     G ++  N +   AS   VL+F  PY+L  YP
Sbjct: 122 TVEAGSSTACLTLFNCGNGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYP 181

Query: 722 R 724
           R
Sbjct: 182 R 182


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 170 NVFQNVEMSIYTIIFKCY 117
           ++F N +M+ YT+IF C+
Sbjct: 157 SIFSNQKMTAYTVIFYCF 174


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 413 FYALSSFSKEYWHFLKPQ 360
           +Y LSSF   YW+ L PQ
Sbjct: 263 YYQLSSFEVRYWNNLLPQ 280


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 435 LKFSAIDFLCTIFFFKGILAFSKAAVGCI 349
           L    I F   IF F GI  ++ AA+ CI
Sbjct: 157 LPLVVIAFFKNIFTFNGIAGYALAALACI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,364
Number of Sequences: 5004
Number of extensions: 61474
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)