Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1j09
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 30 2.3
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 3.1
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 29 4.1
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 29 4.1
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 4.1
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 4.1
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 7.1
01_05_0624 + 23772613-23774671,23774737-23775596 28 7.1
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 28 9.4
01_05_0546 - 23119897-23120109 28 9.4
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 836 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKTDIQGILNDEAKFAQLRDAAQ 891
Query: 356 P 358
P
Sbjct: 892 P 892
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 1013 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKADIQGMLNDEAKYAQLRDAAQ 1068
Query: 356 P 358
P
Sbjct: 1069 P 1069
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 717 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKADIQGMLNDEAKFAQLRDAAQ 772
Query: 356 P 358
P
Sbjct: 773 P 773
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 824 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKADIQGMLNDEAKFAQLRDAAQ 879
Query: 356 P 358
P
Sbjct: 880 P 880
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 854 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKADIQGMLNDEAKFAQLRDAAQ 909
Query: 356 P 358
P
Sbjct: 910 P 910
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 176 RNKMSVYLSRMLKTAIRGRVACVLPTGAISPKQQFISIKSVYIPVLNQLSRRFRSSDAIQ 355
++ ++ + SR KTA+ AC+L G + F ++K+ +LN ++ + DA Q
Sbjct: 837 KDSVTPFASRCSKTAVESLSACLLSNGC----EHFTTLKADIQGMLNDEAKFAQLRDAAQ 892
Query: 356 P 358
P
Sbjct: 893 P 893
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 666 WKPVMSLSLLSPMNLRAIHGXV-IEKEREIMT 758
W P SLSLLSP L I+ V ++K +++T
Sbjct: 1622 WYPPASLSLLSPAKLNEIYSTVGVQKISKVVT 1653
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 721 WIALKFIGLNKLK--DITGFQLG-TVPEHYGSFLEEKYLSLFRANIVNRI 581
+I+ + L +LK D++G LG ++PE GSF +L+L R R+
Sbjct: 124 YISSSLVSLRQLKRLDLSGNVLGESMPEFLGSFQSLTHLNLARMGFYGRV 173
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +2
Query: 401 IVHKKSIAENLSQKEGHFLTLAYATANSYDLKALKEALVEQKLYEPGNLKTVEIGNVVVA 580
I+H S+ +NL K +FLT+ Y +EQ++ +P + ++ G ++
Sbjct: 612 IIHTLSMEDNLLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRI-KPRYARMIDCGVRLIL 670
Query: 581 NAVYNIGSEQRE 616
N + ++ + E
Sbjct: 671 NQLLSVSDSRFE 682
>01_05_0546 - 23119897-23120109
Length = 70
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 435 LKFSAIDFLCTIFFFKGILAFSKAAVGCIAS 343
LK A L T+FFF G++ S A G A+
Sbjct: 4 LKLRACVLLSTVFFFSGLMQLSMAQAGSPAA 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,643
Number of Sequences: 37544
Number of extensions: 335237
Number of successful extensions: 806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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