Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j08
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    28   1.6  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.8  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    27   3.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   3.7  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   3.7  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    27   3.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.7  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    26   6.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   6.4  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    25   8.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.5  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   8.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 290  SKKMALMSIGFTSLMLFIGNGLLF--LGVTFSSKSCVKYFVYVTFAMCLIMIMGCIGAPV 463
            +K ++L+ +G  ++M F     L       FSS+S V+ F + TF      ++    A +
Sbjct: 4533 TKALSLLEVGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFTFEQSNTNVLALADASM 4592

Query: 464  SCFFLAKT 487
             CF  A T
Sbjct: 4593 KCFNYANT 4600


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 434 MIMGCIGAPVSCFFLAKTCVMKKIS--SPAMVIGYLGFTIFIELWLYFMVVGYNF 592
           + +GC   P+S F+ A TC    I    P +   + GF++ I   ++F  V YN+
Sbjct: 419 LFIGCFLLPISMFWFAWTCYPHHIHWIVPIIASAFFGFSLLI---VFF--VSYNY 468


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 251 IAHFMNTTKVDEGSKKMALMSIGFTSLMLFIGNGLLFLGVTFSSKSCVKYFVY---VTFA 421
           +  F+ +   +EG ++ A     +TS +L +  GL   G+T    + VKY+VY   V F 
Sbjct: 266 VVSFLFSLVFEEGLEQSA-----YTSFLLVLCFGL---GIT--KPALVKYYVYLAFVAFV 315

Query: 422 MCLIMIMGCIGAPVSCFFLAKTCVMKKISSPAMVIGYLGFTIFIELWLY 568
             L +    +  PV  F+  +  ++K I +    + Y G   F    LY
Sbjct: 316 QGLFVTFAPLSYPVMSFYGVRGILLKLIWNIYTFV-YYGLPFFAVYRLY 363


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 522 TIAGEDIFFITQVFARKKHDTGAPIQPMIIIRHMAKVTYTKYLT--QDLDENVTPKNSKP 349
           TI  +++   T      KH   A +   I + ++ K T   + T  Q L + V PK  KP
Sbjct: 53  TIELDNLAAETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKP 112

Query: 348 FPM 340
            PM
Sbjct: 113 APM 115


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 542 TIFIELWLYFMVVGYNF 592
           T+F+ +WL F+ +GY+F
Sbjct: 275 TLFVIIWLAFLWIGYSF 291


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 244 LLNNAIHDDTSQASPSSCKTEPRYQKTPIFRREHTET 134
           L +NA  +++S  SPSS   +PR Q+   F    T +
Sbjct: 43  LSSNAFKNNSSSISPSSSAKDPREQRKRTFPLNDTHS 79


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -3

Query: 672 YETGLKQATSSFAQNLSDRNLNYNDSLKLYPTTIKYNHNSINM 544
           YETGL       A    D NL YND L+ Y    K N  S NM
Sbjct: 311 YETGL------LAGEELDENLPYNDYLQYYGPDYKLNVLSNNM 347


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 660 LKQATSSFAQNLSDRNLNYNDSLKLYPTTIKYNHNSINMVKPK 532
           L Q++SS +Q+   R +    +  + P TIK N +S N++KP+
Sbjct: 13  LPQSSSSLSQS---REIAKEFTSNIPPPTIKTNSSSSNILKPR 52


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 164 THISEGTYRNNDLLRASPFSKKLLTIFV*MFFVY 63
           + I EG + +  +   S   KKLLT+FV  FFVY
Sbjct: 328 SRIMEG-FSSTIIASFSSLLKKLLTLFVLSFFVY 360


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 203 SLQLQDRAKISKDTHISEGTYRNNDLLRASPFSKKL 96
           S  L+ R K  KD  +          L+A PFSKK+
Sbjct: 68  STLLEPRPKTKKDVVLKNSNVTECVALKAKPFSKKI 103


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 459 GAPIQPMIIIRHMAKVTYTKYLTQDLDENVTPKN 358
           G  I   +I R   +   T+Y T+ LDEN  P N
Sbjct: 188 GRTITLALISRRSKQRAGTRYFTRGLDENGNPAN 221


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 669 ETGLKQATSSFAQNLS-DRNLNYNDSLKLYPTTIKYNHNSINMVKP 535
           E  L  ++ S  Q    DR LN+ DS  L PT  + + N + + KP
Sbjct: 3   EISLDYSSPSLQQTEEQDRELNFIDSSMLRPTPPQESDNRLAVEKP 48


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 130 IYFGHLHFQ-KNYLLYLYKCFLFIYKDLNINFIDSFDLS 17
           IYF  L     N +L +Y  F  +Y DL  +FI+  DLS
Sbjct: 6   IYFTSLMLTCANIMLQMY--FTVMYSDLKDDFINPIDLS 42


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 268 IHEMSNDLLLNNAIHDDTSQA-SPSSCKTEPRYQKTPI 158
           IH +SN  + NN I  ++SQ  +PSS  T   ++ + I
Sbjct: 139 IHRLSNISIGNNPIDFESSQQNNPSSLNTSSHHRTSSI 176


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 422 MCLIMIMGCIGAPVSCFFLAKTCVMKKISSPAMVIGYLGFTIFIELW 562
           + L+  +GCI  P  C+F + T    K S  +MVI  +   +   LW
Sbjct: 557 LSLLSWLGCITMPSICYFYSST---TKPSDKSMVIAAVIGLLSEHLW 600


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 454  CTCIVFFSRKDLCNEKNIFTRYGHWLFRFYHIYRIVVIFYGGG 582
            C C +F   KD+C +   + ++GH +F   H     V  + GG
Sbjct: 1348 CVCSIFNIEKDICTK---YVQFGH-VFNLLHSIISYVRKHQGG 1386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,644
Number of Sequences: 5004
Number of extensions: 71834
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)