Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j08
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095441-1|AAH95441.1|  253|Homo sapiens CLDND1 protein protein.       31   4.3  
BC022551-1|AAH22551.1|  253|Homo sapiens claudin domain containi...    31   4.3  
BC013610-1|AAH13610.1|  253|Homo sapiens claudin domain containi...    31   4.3  
BC001757-1|AAH01757.2|  253|Homo sapiens claudin domain containi...    31   4.3  
AJ270952-1|CAB89684.1|  253|Homo sapiens putative membrane prote...    31   4.3  

>BC095441-1|AAH95441.1|  253|Homo sapiens CLDND1 protein protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 LMLFIGNGLLFLGVTFSSKSCVKYFVYVTFAMCLIMIMG--CIGAPVSCFFLAKTCVMKK 502
           L+ F+  GL+  G      +C+   +Y T A  ++ ++   C    VSC+      + +K
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQK 201

Query: 503 ISSPAMVIGYLGFT 544
           +  P  V G  G++
Sbjct: 202 LELPDNVSGEFGWS 215


>BC022551-1|AAH22551.1|  253|Homo sapiens claudin domain containing
           1 protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 LMLFIGNGLLFLGVTFSSKSCVKYFVYVTFAMCLIMIMG--CIGAPVSCFFLAKTCVMKK 502
           L+ F+  GL+  G      +C+   +Y T A  ++ ++   C    VSC+      + +K
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQK 201

Query: 503 ISSPAMVIGYLGFT 544
           +  P  V G  G++
Sbjct: 202 LELPDNVSGEFGWS 215


>BC013610-1|AAH13610.1|  253|Homo sapiens claudin domain containing
           1 protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 LMLFIGNGLLFLGVTFSSKSCVKYFVYVTFAMCLIMIMG--CIGAPVSCFFLAKTCVMKK 502
           L+ F+  GL+  G      +C+   +Y T A  ++ ++   C    VSC+      + +K
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQK 201

Query: 503 ISSPAMVIGYLGFT 544
           +  P  V G  G++
Sbjct: 202 LELPDNVSGEFGWS 215


>BC001757-1|AAH01757.2|  253|Homo sapiens claudin domain containing
           1 protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 LMLFIGNGLLFLGVTFSSKSCVKYFVYVTFAMCLIMIMG--CIGAPVSCFFLAKTCVMKK 502
           L+ F+  GL+  G      +C+   +Y T A  ++ ++   C    VSC+      + +K
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQK 201

Query: 503 ISSPAMVIGYLGFT 544
           +  P  V G  G++
Sbjct: 202 LELPDNVSGEFGWS 215


>AJ270952-1|CAB89684.1|  253|Homo sapiens putative membrane protein
           protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 LMLFIGNGLLFLGVTFSSKSCVKYFVYVTFAMCLIMIMG--CIGAPVSCFFLAKTCVMKK 502
           L+ F+  GL+  G      +C+   +Y T A  ++ ++   C    VSC+      + +K
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQK 201

Query: 503 ISSPAMVIGYLGFT 544
           +  P  V G  G++
Sbjct: 202 LELPDNVSGEFGWS 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,592,878
Number of Sequences: 237096
Number of extensions: 2284497
Number of successful extensions: 4255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)