Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j07
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076...    33   0.17 
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    30   1.6  
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    30   1.6  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    26   2.5  
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419     29   2.8  

>12_02_0781 + 23105554-23106855,23107191-23107511,23107581-23107667,
            23107907-23108302,23108327-23108500,23108600-23108764,
            23108857-23109151,23109319-23109446,23109681-23109986,
            23110531-23110591,23110676-23110915,23111251-23111372
          Length = 1198

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 466  FEMPLRARQAVSPGYPGLLETYHGVFVNIMYTL----KCNMKRSFLNKPLFTTCQFFVQY 633
            F + L  +  +SPG  G++ +Y G+ +N+++      +C++    ++    +     V+Y
Sbjct: 901  FVITLLPQGTLSPGVAGMVLSY-GLSLNMLFLFSIQNQCSLANQIISVERISQYMDIVKY 959

Query: 634  RHQERPVQKGVRCEMSG 684
                 PV KG+ C   G
Sbjct: 960  TQDASPVLKGISCTFQG 976


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +1

Query: 295 HEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIP-VGITEIP-- 465
           HE    T++  + L  ST+ +    + S++IK + ++   +  AL   +   GI  +P  
Sbjct: 307 HEDWVNTVKPKLGLDTSTRVLQAVNSKSDNIKSLYIVRNELRAALKNLLKDTGILVLPTT 366

Query: 466 --FEMPLRARQAVSPGYPGLLETYHGV 540
             + +   ARQ +SPG+   +  + G+
Sbjct: 367 AGYPLKRNARQRLSPGFEDRMSAFVGI 393


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 423 SSPR*DPCRHHRDSI*DATAGPSGCISRISWSTGDL 530
           S P   P  HHR     A +G SG  +R  W TG L
Sbjct: 150 SGPALSPLNHHRAFGGGAESGSSGAATRARWVTGTL 185


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 25.8 bits (54), Expect(2) = 2.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 263 WWWWRAVAM 289
           WWWW AVA+
Sbjct: 19  WWWWWAVAV 27



 Score = 22.2 bits (45), Expect(2) = 2.5
 Identities = 4/6 (66%), Positives = 5/6 (83%)
 Frame = +2

Query: 257 LAWWWW 274
           + WWWW
Sbjct: 16  VVWWWW 21


>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
          Length = 464

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 560 VYIILTNTPW*VSSRPGYPGDTA*RARSGISNGISVMPTG----ILPGRASSTVTF 405
           V I++  T W      G  G TA  AR+ +SN +S + +G    ++PG+   T  F
Sbjct: 262 VEIVVAETGWPTRGDAGEAGATADNARAYVSNLVSHLRSGAGTPLMPGKPVDTYLF 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,720,614
Number of Sequences: 37544
Number of extensions: 363267
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)