Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j07
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical
           protein C02H6.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
 Frame = +1

Query: 307 SLTMEGCVNLQLSTKNVGIFEAFS---NSIKPINLINVTVELALPGKIPVGITEIPFEMP 477
           SL + G   L    +N+  FE F          +  NV   L  P K   G  EI    P
Sbjct: 234 SLEITGYCTLPKEMENLFHFEHFQLLLTQFSKTDASNVKKALRKPSKFVSGTFEIFIYNP 293

Query: 478 LRARQAVSPGYPGLLE---TYHGVFVNIMYTLKCNMKRSFLNK 597
                   P Y G +     Y+ +  N M+ L  + KR  + K
Sbjct: 294 AEVASVFDPQYTGGINGSIDYNVLEANSMFRLIFSQKRMIIEK 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,786
Number of Sequences: 27780
Number of extensions: 331657
Number of successful extensions: 730
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)