Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j07
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 467 NGISVMPT--GILPGRASSTVTFIKFIGLMLFEKASNMPTFL 348
           N + V+ T  G++   AS   ++++  G ML+   S++ TFL
Sbjct: 271 NTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFL 312


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 467 NGISVMPT--GILPGRASSTVTFIKFIGLMLFEKASNMPTFL 348
           N + V+ T  G++   AS   ++++  G ML+   S++ TFL
Sbjct: 271 NTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFL 312


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 304 LSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPF 468
           ++L +   VN+ +   NV +  A  ++ K  N+ N+ +       + VG+  +PF
Sbjct: 67  VTLIVLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPF 121


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 294 SHIATALHHHHA 259
           SHI    HHHH+
Sbjct: 424 SHIHATPHHHHS 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,242
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)