Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j06
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    32   0.080
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   1.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   3.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   6.9  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 178 RTWLCRLLRWPSGWSQHNVSPPASTRCSPA 89
           R WL R     S  SQH V+PP    CSPA
Sbjct: 200 RFWLKRRTNVKSSPSQHPVNPPTGPACSPA 229


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -3

Query: 323 SSLRIYS*INKSRSFLIVVNNEIYVISSGSSRHEVLSGD 207
           S++RI+  +N  +  +++ +N  Y+ S  S  H+++SG+
Sbjct: 609 STIRIWD-LNTGKPLMVLPSNSGYISSFVSDEHKIISGN 646


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 102 RVDAGGDTLCCDHPDGHRRSLHNQVRRKIRLLRNKVTRENLMSGAPGGD 248
           R D  G T+C  +  G    LH    R I L +NK+TR     G PGG+
Sbjct: 431 RKDRHGQTVC--NACGLYARLHGH-NRPIGLKKNKITRRRRGKG-PGGE 475


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 448 VPYRSVWLLVLKVRITHISNIKSAALI 368
           +PYR  + +V K  I+H+   KS  LI
Sbjct: 878 LPYRDYFKIVTKTSISHLRREKSRLLI 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,538
Number of Sequences: 5004
Number of extensions: 45008
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)