Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j06
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    32   0.30 
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    31   0.91 
AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    29   2.8  
AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine r...    28   6.4  
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 523 NILYLSFHF*IFTLKLLVTFQPVLEVP 443
           NI Y+++ F  FTL +L+ F PVL +P
Sbjct: 14  NIAYINYQFSFFTLPVLLLFVPVLYIP 40


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = -1

Query: 523 NILYLSFHF*IFTLKLLVTFQPVLEVPYRSVWLLVLKVRITHISNIKSAALIIKTIDSIK 344
           N  +++F F  +TL +L    P+L +P   + +L + V++ +    ++  + + +  SI 
Sbjct: 18  NSTFINFEFSFYTLPMLFLLVPILYIPITIIIILRILVKLYYAFRDRNNNVYLLSAISIS 77

Query: 343 DCL 335
            C+
Sbjct: 78  QCM 80


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 523 NILYLSFHF*IFTLKLLVTFQPVLEVPYRSVWLLVLKVRITHISNIKSAALIIKTIDSIK 344
           N  +++F F  FTL + + F PV+ +P   + +L + V++ +    K+  + + T   I 
Sbjct: 19  NETFINFEFSFFTLPMFLLFLPVIYMPITFIVMLRILVKLKYAMRDKNVNVPLFTAICIS 78

Query: 343 DCLFTNLL 320
              FT LL
Sbjct: 79  Q--FTCLL 84


>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -1

Query: 523 NILYLSFHF*IFTLKLLVTFQPVLEVPYRSVWLLVLKVRITHISNIKSAALIIKTIDSI 347
           N  +++F F  FTL + +   PVL +P   + +L + V++ +    K+  + + T  SI
Sbjct: 17  NETFINFEFSFFTLPMFLLIFPVLYMPITFIVMLRILVKLKYAMRDKNINVPLFTAISI 75


>AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine
           receptor, class u protein25 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 514 YLSFHF*IFTLKLLVTFQPVLEVP 443
           +++F F  FT+ +L+T  P+L +P
Sbjct: 18  FINFEFSFFTIPMLLTITPILYIP 41


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 99  HRVDAGGDTLCCDHPDGHRRSLH---NQVRRKIRLLRNKVTRENLMSGAPGGDYVD 257
           H+V   G+ +  D  DG   S+H   N+ RR+  +L+ K+ R      A G D  D
Sbjct: 215 HQVVFDGNEIGEDELDGSFPSIHQASNRKRRRHVVLKTKIRRRRRRKRAAGSDEED 270


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 184 FLRTWLCRLLRWPSGWSQHNVSPPASTRCSPARHRSA 74
           +L+T    L     GW + N SPP + R + A  RSA
Sbjct: 397 YLKTKSISLDENTCGWCEKNASPPFTKRITEAIQRSA 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,897
Number of Sequences: 27780
Number of extensions: 255783
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)