Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j04
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   259   2e-70
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   259   2e-70
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   259   2e-70
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    68   1e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    30   0.20 
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    28   0.81 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   4.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.3  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   10.0 

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  259 bits (634), Expect = 2e-70
 Identities = 113/154 (73%), Positives = 134/154 (87%)
 Frame = +3

Query: 3   FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 182
           FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +T
Sbjct: 86  FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145

Query: 183 RVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 362
           RVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNP
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205

Query: 363 VEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 464
           V+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 206 VDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  259 bits (634), Expect = 2e-70
 Identities = 113/154 (73%), Positives = 134/154 (87%)
 Frame = +3

Query: 3   FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 182
           FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +T
Sbjct: 86  FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145

Query: 183 RVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 362
           RVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNP
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205

Query: 363 VEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 464
           V+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 206 VDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  259 bits (634), Expect = 2e-70
 Identities = 113/154 (73%), Positives = 134/154 (87%)
 Frame = +3

Query: 3   FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 182
           FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ D  +T
Sbjct: 86  FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145

Query: 183 RVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 362
           RVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNP
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205

Query: 363 VEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 464
           V+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 206 VDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 41/125 (32%), Positives = 69/125 (55%)
 Frame = +3

Query: 30  LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 209
           L+ GN  P+  +P GT++  +      + +L R++G+ A +I    D K   V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219

Query: 210 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 389
           + +  ++   +G+V+      + + KAGR+  ++   R   P VRG AMNP +HPHGGG 
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274

Query: 390 HQHIG 404
            + IG
Sbjct: 275 GKSIG 279


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 256 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 86
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 267 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 359
           ++KPI        K+K K +CW  +RG   N
Sbjct: 68  VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 115 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 17
           P++P+F SR H   P G+  T   FP     F+
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -1

Query: 473 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 300
           G ASS+  + A    SS  +GSL Y    T  V  ++ R  G ++T +  +  F      
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498

Query: 299 CPSSFQ--NRFVNTSTSSNNTDHASV 228
             +S Q  +   ++S++SN    +SV
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSSSV 524


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 208 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 101
           +AP  + T+ ++A+GLC   +      RA  PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,514
Number of Sequences: 5004
Number of extensions: 50840
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)