Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j03
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   4.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 277 LPCVEMQQPATPQDPGA-SPYPLQPTDKIAPLPKQ 378
           +P      PA P  P A +P P  P   IA LP+Q
Sbjct: 463 MPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQ 497


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 570 NFMQWDARCKEFIDRELVA*LTG 638
           N + WD    EF+DR++VA  TG
Sbjct: 808 NLLGWDIGTLEFMDRQIVAEGTG 830


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 220  IIIFMLWYIGIAYNYYVGTLPCVEMQQPATPQDPGASPYPLQPTD 354
            +II   ++I + Y Y +G +  + +  P   +     PYP +  D
Sbjct: 1209 VIIDQTYFINV-YKYVIGNIIYILLDAPIFRRQTSGKPYPSRADD 1252


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 478 FTKKMSLLLKMIQHSFT-LVRLRFY 549
           FT+K S +L+MI HS T  V LR Y
Sbjct: 529 FTRKSSSILRMISHSNTDPVELRSY 553


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 289  EMQQPATPQDPGASPYPLQPTDKIAPLPKQ*NHKSL 396
            E ++P  P  P  +P P     K AP+ K+   KS+
Sbjct: 972  EAKKPEAPSRPRTAPIPEPEEQKKAPVEKKDAEKSV 1007


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,692
Number of Sequences: 5004
Number of extensions: 59528
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)