Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1j03
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209     32   0.41 
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809...    30   2.2  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           29   5.0  
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292     28   6.6  
01_06_1785 - 39859790-39860671                                         28   6.6  
11_06_0050 + 19631164-19631987,19632103-19634023                       28   8.7  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    28   8.7  

>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
          Length = 455

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 364 PLPKQ*NHKSLGTCDNDDRXXXXXXXXXXXXINALYEDFTKKMSLLLKMIQHSFTLVRLR 543
           PLP   +H ++   D D +            INA     TK +    K  +H+ +L+ +R
Sbjct: 67  PLPTMISHLTIDVSDFDPKSMSSFSDDELGRINATVVKATKSILACRKSNEHTISLLSMR 126

Query: 544 FYI 552
           FY+
Sbjct: 127 FYL 129


>11_02_0082 -
           8088169-8088284,8088613-8088697,8090344-8090442,
           8090537-8090609,8090694-8090804,8090901-8091074,
           8091184-8091574,8091662-8092283,8092379-8093251,
           8093294-8093800
          Length = 1016

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 154 YRKLNLNNFKXXXXXTMAETS-GIIIFMLWYIGIAYNYYVGTLPCVEMQQPATPQDPGAS 330
           Y  L L+  +      + +TS  II++  WYI +         P      P+ PQDP  S
Sbjct: 496 YEDLELDYRRGDGETHLRDTSHAIILWRRWYIILPGRQAASRAPSPPAP-PSPPQDPAPS 554

Query: 331 PYPLQPTDKIAP-LPK 375
           P    P D +AP LP+
Sbjct: 555 P----PHDPLAPSLPQ 566


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 709 GYLKWFLKW*LKIAR--RLFSIRNSHPVSQATSSRSMNSLHRASH 581
           G L   L W  ++AR  RLFS R   P S  +S R + S  +ASH
Sbjct: 24  GVLLHLLDWHRRLARKRRLFSPRRLLPTSLRSSPRRLPSPPQASH 68


>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
          Length = 222

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 406 HMFRETCGFTVLAVVRSCPLAEAGTGKHLDPVGLRAVAFQHRVG 275
           H F   CG T     RS P   A T   +DP  L  V ++H  G
Sbjct: 36  HTFCRVCGITSFYTPRSNPDGVAVTAACVDPGTLAHVEYRHADG 79


>01_06_1785 - 39859790-39860671
          Length = 293

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 207 RNIRYYYLHALVHRDRVQLLRRYPTLC*NATARNPTGSRCFPVPASANGQD 359
           R++R + LH    R    +L ++      +TA +P+ +   P+PA+A G D
Sbjct: 222 RSLRSHGLHVPPWRKTRYMLAKWLGPYKRSTATSPSAAGAMPMPAAAAGMD 272


>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 422 SLSSLSHVPRDLWFHCFGS 366
           +LSSL HV  D+W  CFGS
Sbjct: 868 NLSSLEHV--DVWMRCFGS 884


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 479 KSSYSALIVANNVNQKAVASLSSLSHVPRDLWFHCFGSGAILSVG*SGYGEAPGS 315
           KSS +A++V       A AS SS+SH      FH   SGA+      G+   PGS
Sbjct: 25  KSSPAAIVV----RPPATASSSSMSH---SQGFHQPSSGAVFGFSSDGFDGRPGS 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,444
Number of Sequences: 37544
Number of extensions: 392458
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)