Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1j01
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 138 6e-34
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 35 0.013
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 1.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.5
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 27 2.0
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 2.7
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 3.6
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 26 4.7
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 4.7
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 4.7
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 26 6.2
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce... 26 6.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.2
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 8.2
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 8.2
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 138 bits (335), Expect = 6e-34
Identities = 90/229 (39%), Positives = 122/229 (53%), Gaps = 24/229 (10%)
Frame = +1
Query: 55 YCN-KISYNSQCKCEMKMKDFIHYLRKSERTQL-------------LYLKDWHL-KNVRP 189
YCN K Y SQ + + +K +H LR E+ QL LY KD HL +++ P
Sbjct: 137 YCNEKDRYGSQRRETVPLKSALHELR-DEQVQLQCRQAPSNQALKSLYAKDMHLFRHLDP 195
Query: 190 TDNFYEVPKVFGLDWLNEYAQDNNEDDFRFVYIGPQNSWTPLHSDVYSSYSWSVNVFGRK 369
D Y P +F DWLN Y D DDFRF Y+G + T LH+DVY+S+S+SVN+ G K
Sbjct: 196 ADFPYSTPDIFADDWLNAYVIDCESDDFRFAYLGSHLTTTGLHTDVYASHSFSVNLCGVK 255
Query: 370 EWTLFPPGEERKLKDSLGN--LPLMYNEKSF---PNIQH---LKII-QESGDAIFVPSGW 522
W P + + + + LP + P + H +KI+ Q G +FVPSGW
Sbjct: 256 CWLFIDPKDLQTIASLYDDQQLPSWITKDDLFRGPLVNHRHLIKILFQYPGQTVFVPSGW 315
Query: 523 YHQVVNLQDTISINHNWINSCNIVFMWKSLHENLLTIENEIEHLKDTPE 669
YHQV+N+ T+SINHNW N+ I+ M+ +L E E E LKD E
Sbjct: 316 YHQVLNIGTTLSINHNWCNASCILQMYTALKEQ---YEVSAESLKDLLE 361
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 34.7 bits (76), Expect = 0.013
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +1
Query: 277 FVYIGPQNSWTPLHSDVYSSYSWSVNVFGRKEWTLFPPGEERKLKDSLGNLPLMYNEKSF 456
+ + +NS+T H + S ++ + G K + L P + + ++K F
Sbjct: 284 YCLMSAENSYTEFHIEFGGSSAYYNILDGCKIFYLIPGTSKNWEAYTAWLTSSNDSDKKF 343
Query: 457 -PNIQHLKIIQE--SGDAIFVPSGWYHQVVNLQDTISINHNWINSCNI 591
PN+ + E S I VPSGW + VV DTISI N++ +I
Sbjct: 344 LPNMVDVCYCVEVHSQQTILVPSGWIYAVVTPCDTISIAGNFLTFLHI 391
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 283 YIGPQNSWTPLHSDVYSSYSWSVNVFGRKEWTLFPPGEERKL 408
++G S TPL D S Y+ S N+ R+ + + P E L
Sbjct: 163 FVGNSGSGTPLDGDSGSFYADSANLTNREPYPAWTPENELPL 204
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 43 YIKKYCNKISYNSQCKCEMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPT 192
+++KY + N E + +H L R Q+LYL ++ N+ P+
Sbjct: 1253 HLEKYRHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPS 1302
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 2.0
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 487 ESGDAIFVPSGWYHQVVN 540
E GD +++P+ W+H+V +
Sbjct: 381 EPGDMLYLPASWFHEVTS 398
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 480 NPRKW*CHICSIRMVPSSCKFARH 551
N R+W CH C+I++ S ARH
Sbjct: 16 NQRRW-CHECTIKIFRRSFDIARH 38
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 187 PTDNFYEVPKVFGLDWLNEYAQDNNEDD 270
P NF+ V +++ +EY++ +NEDD
Sbjct: 47 PDLNFFSTQNVMQMNFEDEYSEFSNEDD 74
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 FVYIGPQNSWTPLHS-DVYSSYSWSVNVFGRKEWTLFPPGEERK 405
F P+NS T L + +YSW+ + +WT PP E R+
Sbjct: 202 FPKFNPENSVTSLDLVEPPENYSWAP----QSDWTFVPPNEFRR 241
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 49 KKYCNKISYNSQCKC--EMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPTDNFYEVPKVF 222
K Y + +C+ E + D + +L+K E ++LY KD+ + NF K+
Sbjct: 345 KIYSESVVDLDKCRTLVEETIADHLQFLQKCETDRVLYYKDFFMDLSTIISNFLPSMKLL 404
Query: 223 GLDWLNEYAQ-DNNEDDFRFV 282
D + Y + E D R++
Sbjct: 405 A-DQIVVYQEIIQPESDIRYI 424
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 425 FPKLSFSFRSSPGGNKVHSFLPNTLTDQLY 336
FP L+F+ +P K + + N +TD L+
Sbjct: 179 FPALTFTGNITPSKEKFDAIMANQITDHLF 208
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 310 PLHSDVYSSYSWSVNVFGRKEWTLFP--PGEERKLKDSLGNLPL 435
P DVY+ Y+ +V FG K + P P +R +K S N PL
Sbjct: 6 PFFDDVYAYYNQTVTFFG-KALDVLPGSPIVKRYIKSSYQNDPL 48
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 421 GNLPLMYNEKSFPNIQHLKIIQESGDAIF-VPSG 519
G+ P++ +K+F HLK+++E F +P G
Sbjct: 144 GSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKG 177
>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 178
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 472 LKIIQESGDAIFVPSGWYHQVVNLQD 549
++I E GD I +P G YH+ D
Sbjct: 109 VRIFVEKGDLIILPPGIYHRFTTTTD 134
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 434 KGKFPKLSFSFRSSPGGNKVHSFLPNTLTDQ 342
KGKF + F S G + FLPN L Q
Sbjct: 797 KGKFEVVPFLLSSLDGIAHIRVFLPNDLKSQ 827
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 604 KSLHENLLTIENEIEHLKDTPEFHDQCQLILKS 702
K +N+ E+ + + DTP+ QC +LKS
Sbjct: 29 KVCRDNIALSEHNVITVLDTPQRSTQCDSLLKS 61
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +1
Query: 37 TMYIK-KYCNKISYNSQCKCEMKMKDFIHYLRKS-ERTQLLYLKDWHLKNVRPTDNFYEV 210
T+YI+ +YC K+S + ++ + + R+ E ++ + ++++P + F +
Sbjct: 723 TLYIQMEYCEKLSLQDIIRDKIPVDEMWRLFRQILEALAYIHSRGMMHRDLKPGNIFLDE 782
Query: 211 PKV-----FGLDWLNEYAQDNNE 264
+ FGL NE QDNN+
Sbjct: 783 NRNVKLGDFGLATENENYQDNND 805
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,197
Number of Sequences: 5004
Number of extensions: 73938
Number of successful extensions: 235
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -