Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1i23
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 77 3e-15
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 70 2e-13
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.8
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 2.8
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 3.7
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 3.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 4.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 6.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 8.5
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 8.5
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.5
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 76.6 bits (180), Expect = 3e-15
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Frame = +2
Query: 113 LTIEPQNELKFKGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQ 292
+++E EL F F + + NP + V+FK+KTTAPK YCVRPNSG + P S
Sbjct: 1 MSVECSGELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTV 60
Query: 293 EIAITPQPVYLDPNENHK--HKFMVQSVIAPEGKT----NIDQVWKEISPE--QLMDYKL 448
+ + Q + +P + K KF++QS+ + T N + W E+ + + D K+
Sbjct: 61 NVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKI 120
Query: 449 KCVFETPRGTNLNDSGDNAAQNDVT 523
+CV+ T + S D +N T
Sbjct: 121 RCVYSTKQPP---QSADKQVENTST 142
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 70.1 bits (164), Expect = 2e-13
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Frame = +2
Query: 179 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK--HK 352
+ L N + FK+KTTAPK+YCVRPN G + NS + + QP+ +P K K
Sbjct: 23 LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDK 82
Query: 353 FMVQSV-IAPEGK-TNIDQVWKEISPEQLMDYKLKCVF-ETPRGTN 481
F+VQS + PE + +I +W ++S + + K++CV+ E P N
Sbjct: 83 FLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVYSEGPSTAN 128
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 311 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISP 424
Q +Y + +EN + FM+ +++ +ID +W +SP
Sbjct: 305 QYMYKEDDENLESYFMMVALLIKYNFISIDNIWAHLSP 342
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 317 VYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPE-QLMDY 442
V+ NE + + + EG TN+++VW +I+ + Q D+
Sbjct: 83 VFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDF 125
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 338 NHKHKFM-VQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGT 478
NH F V+ I P G TN+D +W+ +L+D L +F T T
Sbjct: 1160 NHPFIFEDVERAIDPSG-TNVDLLWRAAGKFELLDRILPKLFLTGHKT 1206
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/51 (19%), Positives = 28/51 (54%)
Frame = +3
Query: 201 TIQCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNLYIWTPMKTTSIN 353
+++ Y+ S + ++ +P++ F+R +RN + LL + + +++ N
Sbjct: 757 SLRLYNVSAEYLSESLEILPVVSFIRNLRNDEKYLLNADFSYALKRSSGSN 807
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 LDPNENHKHKFMVQSVIAPEGKTNIDQV 406
L N+NH + V +V+ +G TN+D +
Sbjct: 168 LSQNKNHFAQLAVDAVLRLKGSTNLDNI 195
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 304 NCDFLFRIWRKNSRIGTHAIFLWCC 230
N + +FR+WR RI HAI C
Sbjct: 233 NEEVIFRLWRNIDRIRLHAIRAQLC 257
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 323 NIQVAE*LRFL-VSNLAQELQNWDARNISLVLLF 225
N+Q E ++L VSNL +++ WD R +V +F
Sbjct: 228 NLQFTENRKYLLVSNLNSQIRLWDYRRNRVVRIF 261
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 178 HETNEPDKRYSAIQDQNNSTKE 243
HE +E KR ++++NN KE
Sbjct: 620 HEFDELQKRLQTLEEENNKAKE 641
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 178 HETNEPDKRYSAIQDQNNSTKEILRASQFWSSCAKFETRNRNYSA 312
HE E DK Y ++++ + ++ R Q K+E N S+
Sbjct: 84 HEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSS 128
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 296 IAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKE 415
+A+ PQ VY NEN + + + +S IA T +D K+
Sbjct: 492 MALAPQEVYKPSNENREGETITRSGIA-ISSTEMDHQQKQ 530
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 296 FLVSNLAQELQNWDARNISLVL 231
F VSN+ E+ N+D+R+ SL L
Sbjct: 415 FEVSNIEDEVTNFDSRSFSLRL 436
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 225 KQQHQRNIACVPILEFLRQIRNKKSQLLRNLYIWTPMKTTSI 350
K + R I +PI++ LR+ R + + +W +K S+
Sbjct: 77 KDEIIRRIPLLPIIQELRETRMSEVSAEEKILLWNQLKFMSL 118
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/80 (21%), Positives = 32/80 (40%)
Frame = +2
Query: 161 HGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNEN 340
H T +++ NP N+ V I PK PN +++ +P + +
Sbjct: 5 HNIPTAIQIQNPINNNVSVTISDQLPKPSANNPNL----------LSVDTRPTH-RKGHH 53
Query: 341 HKHKFMVQSVIAPEGKTNID 400
HKH Q + P+ + ++
Sbjct: 54 HKHSLSHQYFLPPKNRQPLE 73
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 197 TNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNE 337
T T +T AP+KY R G E ITP L P +
Sbjct: 166 TTTTKSSTAETNAPEKYSTRSGFGFGFSTGTNESEITPNIKVLPPKK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,181
Number of Sequences: 5004
Number of extensions: 55816
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -