Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1i23
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.57 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.57 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.3  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 95  KMPNQVLTIEPQNELKFKGLFEHGCTTYMRLT 190
           K+ + +LT+ P  EL F+ +  H  T Y+  T
Sbjct: 247 KLNDILLTVRPHLELTFENILSHINTVYVLRT 278


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 95  KMPNQVLTIEPQNELKFKGLFEHGCTTYMRLT 190
           K+ + +LT+ P  EL F+ +  H  T Y+  T
Sbjct: 247 KLNDILLTVRPHLELTFENILSHINTVYVLRT 278


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 207 QCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNL 317
           QC+S    +     A VP+LE ++Q + K+S+ L+ +
Sbjct: 837 QCWSGEPSKRPLLGAIVPVLESIQQ-KAKRSKSLQEV 872


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 207 QCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNL 317
           QC+S    +     A VP+LE ++Q + K+S+ L+ +
Sbjct: 875 QCWSGEPSKRPLLGAIVPVLESIQQ-KAKRSKSLQEV 910


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 210 TVSFVGFVSLM*VVQPCSKSPLNFNSFCGSIVSTWL 103
           T++ + F     +V+  S  PL+ N     I++ WL
Sbjct: 142 TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWL 177


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 210 TVSFVGFVSLM*VVQPCSKSPLNFNSFCGSIVSTWL 103
           T++ + F     +V+  S  PL+ N     I++ WL
Sbjct: 108 TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWL 143


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 210 TVSFVGFVSLM*VVQPCSKSPLNFNSFCGSIVSTWL 103
           T++ + F     +V+  S  PL+ N     I++ WL
Sbjct: 18  TMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWL 53


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 99  ILLYYKHSISLAKF 58
           ILLYY+ S++L+ F
Sbjct: 315 ILLYYRDSLALSVF 328


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 430 LLGAYLLPHLINVGFSFW 377
           LLG YLL  +I V  S W
Sbjct: 311 LLGKYLLFTMILVTLSIW 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,470
Number of Sequences: 438
Number of extensions: 3522
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)