Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1i13
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 29 0.53
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 28 1.6
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.6
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 2.1
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 27 2.1
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 27 2.1
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 27 3.7
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.7
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 27 3.7
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 3.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 6.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 8.6
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 8.6
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.53
Identities = 30/94 (31%), Positives = 42/94 (44%)
Frame = +3
Query: 45 NQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMKSGIKD 224
N K +TL LRL EK+ D W LF S E C R FP + +GI
Sbjct: 182 NTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHIS-ALELCTRMFPGIPIMAGIFA 240
Query: 225 MDELLSVITDVPALDLVLQQLDNLEALPNISDII 326
++ + P L+L L+++ NL IS I+
Sbjct: 241 DEKCF----EKPMLNL-LERILNLLQCKYISSIL 269
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +3
Query: 531 AYHGNRLENFYTI-LNFGLQQHLNKNTSL--GNGVYLSPELS 647
AYHG+R +N+Y + +FG ++ L + + G G+YL +++
Sbjct: 100 AYHGHRPKNYYRLNPHFGNEEDLKELSDALHGKGMYLMVDVA 141
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 730 SHKATQDK*PPIQLAPHPKP 671
SHKAT D PP + P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 447 HIFQVISSNKSTVELKWKEL-SKNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNG 623
H+FQ S +S+VELK + + +K + ++ + E+ + L+ + + + T L
Sbjct: 650 HLFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKESLFQFLSIYIPECMLPFTKLLKS 709
Query: 624 VYLSPELSATIPHS 665
+Y SP+ I +S
Sbjct: 710 IY-SPDCPTNIQNS 722
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/74 (17%), Positives = 37/74 (50%)
Frame = +3
Query: 270 LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMANTMTTPSKPQH 449
+++ +++ A+ I D L+F+V ++ + T+K ++ NT+ P+ +
Sbjct: 61 IIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKK 120
Query: 450 IFQVISSNKSTVEL 491
F +S++ +++
Sbjct: 121 AFVKLSADADALDV 134
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 510 KNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSH 668
K HN +++GNR ++I+N GL +L K+ + L+ + AT + H
Sbjct: 339 KRHNSSQSFYGNRSTTNFSIINSGL--YLKKDAAKN---LLAKQFDATYSYYH 386
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 246 ITDVPALD---LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMA 416
+ P LD +++ +++ A+ I D L+F+V ++ + T+K ++
Sbjct: 50 VAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKI 109
Query: 417 NTMTTPSKPQHIFQVISSNKSTVEL 491
NT+ P+ + F +S++ +++
Sbjct: 110 NTLIRPNGTKKAFVKLSADADALDV 134
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 738 QPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 643
+P++ +IS LR +N PPI+ H+ +L +
Sbjct: 34 RPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +3
Query: 408 AMANTMTTPSKPQHIFQVISSNKSTVELKWKELSKNHNVFYAYHGN----RLENFYTILN 575
++ANT SK ++ S + V+ W E N +AY N R +N +
Sbjct: 127 SLANTHLDSSKGRYFETDFSDQDNGVDCNWPESLLKFNSNFAYLLNTIRTRHDNVAVEIA 186
Query: 576 FGLQQHLNKNTSLGNGVYL 632
+Q++ K + N + +
Sbjct: 187 LDIQEYRRKTNQIDNSIQI 205
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 645 LVLATGILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLSTLVRQ*IC 472
++L +LHY +A+ S+ + S N +R HK+H D ++ L R +C
Sbjct: 19 ILLKKALLHY------KDAIKSEREGNLGESLNKYRLAHKVHEDVESIYRRLERLQLC 70
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 537 HGNRLENFYTILNFGLQQHLNKNTSLGNGV-YLSPELSATIPHSHGGFGWGASCIGGHLS 713
HG ++ ++ N L K +G V +L+ + IPH GG G G C+ HL+
Sbjct: 735 HGGQV--YFDGANMNAMVGLCKAGDIGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLA 792
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 144 VAAAFSFRYESCLRPFPPAF---MKSGIKDMDELLSVITDVPALDLVLQQLDNLEALPNI 314
V F + LR P+F M KD+D LSV TD +V L+ ++ I
Sbjct: 462 VGRTFEESLQKALRQVDPSFLGFMAMPFKDLDNALSVPTDRRFFAVVEAMLNQGYSIDKI 521
Query: 315 SDIIDLLFYVLVRL 356
D+ + + L +L
Sbjct: 522 HDLTKIDKWFLSKL 535
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 27 ETMSDINQTKLDTLEKKAVHLRLVLEK 107
E DI++TKLDTL + L+LEK
Sbjct: 535 EFTDDIHRTKLDTLLTQVRPKELILEK 561
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 6.5
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 729 RTRLHKISDLRYNSPPIRSLHDCEVLSHLVLATGILHYPAKYSCSNAVVSQN*ESYKSSP 550
RT H I L N S+H C++ + T YP+K + SN VS + S+ S
Sbjct: 338 RTITHFIKKLVCNEC---SMHPCDIEEIIAWRTLNSLYPSKATLSNNFVSTSDLSFWSRE 394
Query: 549 NDFRDTHKIH-YDFWTVLSTL 490
R K + + FW S L
Sbjct: 395 YFVRSKGKSYLHCFWCSASWL 415
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 354 LKEPTLKTVPT-DVHEQILAMANTMTTPSKPQHIFQVISSNKSTVELKWKELSKNH 518
L + +LK + ++HE +L + + K Q+ V+ ++ELSK H
Sbjct: 1143 LSDASLKYIELQEIHENLLLKVSDLENYKKKYEGLQLDLEGLKDVDTNFQELSKKH 1198
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -3
Query: 627 ILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLST 493
I H + SC A V ESY+ SP + YD W V T
Sbjct: 534 IYHAALEASCEIAQVEGTYESYEGSP---ASQGILQYDMWNVNPT 575
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 219 KDMDELLSVITDVPALDLVLQQLDNLEALPN 311
K +ELL I PA+ LQQ D E N
Sbjct: 295 KKNEELLRTIDKAPAISKKLQQKDKAEKFSN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,339
Number of Sequences: 5004
Number of extensions: 66923
Number of successful extensions: 214
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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