Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1i13
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 33 0.24
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 2.9
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 29 3.9
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 29 5.1
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 5.1
02_05_0813 - 31951168-31951722 29 5.1
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797... 28 6.8
02_04_0431 - 22841708-22842571,22842659-22842743,22842796-228428... 28 6.8
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 9.0
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 33.1 bits (72), Expect = 0.24
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Frame = +3
Query: 435 SKPQHIFQVISSNKSTVELKWKELSKNHNVF-----YAYHGNRL----ENFYTILNFGLQ 587
S P+ I S+ TV ++++ NHN+F + RL +N+ I G+
Sbjct: 511 SLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSMIQEAGVL 570
Query: 588 QHLNKNTSLGNGVYLSPELSATIPHSHGGFG 680
NT GNGVY + T +S G FG
Sbjct: 571 SQRPGNTKFGNGVYAALPGRGTEQYSGGWFG 601
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 262 LWIWCYNNWIIWKRCQISVISSTYCFTSLCDL 357
LWIW + + +W C + + YC S D+
Sbjct: 226 LWIWPSSRYHVWSNCNLMGKLAQYCVASEMDV 257
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 29.1 bits (62), Expect = 3.9
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Frame = +3
Query: 219 KDMDELLSVITDVPALD------LVLQQLDNLEALPNISDIIDLLF-YVLVRLKEPTLKT 377
+D DEL ++++ P+L L + +L+ +S I LL + ++KE T
Sbjct: 123 RDPDELEWMMSEPPSLKKPKKVPLPNMLVPSLKEKKEMSGSITLLLKHKGDKIKEATNVK 182
Query: 378 VPTDVHEQILAMANTMTTPSKPQHIFQVISSNKSTVELKWKELSK---NHNVFYAYHGNR 548
VP VH+ MA + P P F+ + K E KE K N NV G
Sbjct: 183 VPVAVHDHFNRMARPL-APKPPISDFRRTTRKKRLKEFSKKEFEKDEANKNVQEFLEGAG 241
Query: 549 LENFYTILN 575
L++ + N
Sbjct: 242 LQSLSDVDN 250
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 629 PVARTKCDNTSQSWRLRMGGE 691
P+A CD+ S W+LR GG+
Sbjct: 1096 PMANLLCDSFSDDWQLRSGGD 1116
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 498 KELSKNHNVFYAYHGNRLENFYTIL--NFGLQQHLNKNTSLGNGVYLSPE 641
KE + NV Y + G+R + IL FG + L GVYLSPE
Sbjct: 262 KEERGDANVRYGWLGSRKNDIVRILINGFGNNGKPAEKAGLSAGVYLSPE 311
>02_05_0813 - 31951168-31951722
Length = 184
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 SMISLIFGNASKLSNCCSTKSKAGT--SVITLSNSSMSLMPLF----IKAGGKGRRQLS 170
S+ S++ G + S+CCS+ S+A + S S SS F + AGG+G +LS
Sbjct: 52 SLPSVVRGEEEEASSCCSSSSEASSDASSSAASGSSSPWAARFHREMVAAGGRGGGRLS 110
>04_03_0167 -
12178587-12179203,12179243-12179375,12179540-12179726,
12179800-12179963,12180016-12180234
Length = 439
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 645 LVLATGILHYPAKYSCSNAVVSQN 574
L LA ++ YPAKYSC + +Q+
Sbjct: 398 LQLADSLVRYPAKYSCGRSGATQD 421
>02_04_0431 -
22841708-22842571,22842659-22842743,22842796-22842869,
22842953-22843002,22843086-22843167,22843941-22843987,
22844089-22844131,22844219-22844299,22844413-22844458,
22844557-22844603,22844709-22844774,22845030-22845096,
22845194-22845279
Length = 545
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 552 ENFYTILNFGLQQHLNKN---TSLGNGVYLSPELSATIPHSHGGFGWGASC 695
+N + +FGL + L ++ T +G Y+ PE+ A IP+ + W C
Sbjct: 140 DNNIRLADFGLAKLLMEDLASTIVGTPNYMCPEILADIPYGYKSDIWSLGC 190
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +1
Query: 265 WI--WCYNNWIIWKRCQISVISSTYCFTSLCDLKN 363
W+ W YN II RCQI+V Y + D N
Sbjct: 582 WVEDWDYNKIIICNRCQIAVHQECYGARDVQDFTN 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,104,664
Number of Sequences: 37544
Number of extensions: 415622
Number of successful extensions: 1097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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