Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1i12
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    23   7.4  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   7.4  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    23   7.4  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    22   9.8  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1018

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 58   LFVVCLKVSNVNL*QLTKTVILKNPSTATTLLTRQILTM 174
            L + CL +S++++   T  VI  +    T+LLT  + T+
Sbjct: 908  LLLQCLSLSDISVKLSTLNVIHTSVKELTSLLTEYLDTL 946


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 9    TYFQKMQVMN----YLILLIFICSLFKGFQCKPMTIDENSD 119
            T+F ++ VM     + I L+ +  L K   C P  IDE  D
Sbjct: 1102 THFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVD 1142


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 119 ITVFVNCHRFTLETFKQTTNKNEQY*IIHYL 27
           + V    +   LE  +   N+NE Y   HYL
Sbjct: 194 VQVIPPMYNMLLEEMQWAINENEPYNFTHYL 224


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 146 VVAVLGFFKITVFVNC 99
           VVA +GF  + + +NC
Sbjct: 223 VVATVGFIILAIIINC 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,289
Number of Sequences: 5004
Number of extensions: 8209
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)