Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1i06
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 98 9e-22
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.49
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 28 1.1
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 26 4.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.9
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 7.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.9
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.9
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 7.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.9
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 98.3 bits (234), Expect = 9e-22
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Frame = +2
Query: 161 DDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDE 340
D ++ EL+H+ K K++ E+D ++E IGF G KI ERL R +
Sbjct: 9 DFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITET 68
Query: 341 LDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS--NGHQYLEYAPRYV 514
D M+F+C + W +++K +DNL+TN +G++VL D F + T + G + + Y
Sbjct: 69 TDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQITTPYF 128
Query: 515 AYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHI 616
+ G IRG + ++ V A+ ++P+C FH+
Sbjct: 129 YFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHV 162
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 284 AGYKIMERLTREWPRFKDELDTMKFICT--DFWTCIYKKQIDNLRTNHQGVYVLQDNAFR 457
A ++ + L W KD + +M+ I + + +Y K D + N G+Y+ ++
Sbjct: 117 AAHRFLSSLVNSW---KDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVV-- 171
Query: 458 FLTNFSNGHQYLE 496
L +F G + +E
Sbjct: 172 LLNSFEIGEKCVE 184
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 356 FICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS 475
F+ ++ Y ID + HQG+Y+ +N R +T S
Sbjct: 458 FVVSEAGDFEYHDPIDGSESKHQGLYIKFENGSRIVTRLS 497
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 16 SSFSPFF--LSVCVFICKDRLYYLRSVIIINKYAMSN 120
SSF PF L +F+C D YY+R ++ Y +++
Sbjct: 377 SSFVPFAGNLITELFLCSDNKYYVRHLVNQQVYPLTD 413
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 299 MERLTREWPRFKDELDTMKFICTDFWTCIYKKQI 400
M LT+EWP K+ +D + I + C ++K+I
Sbjct: 235 MSGLTKEWPVLKETVDELIDILR-YSPCTHQKRI 267
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 242 KETDLSVVEYIGFAAGYKIMERLTREWPRFKDE-LDTMKFICTDFWTCIYKKQIDNLRTN 418
KET +S V I + L R WP +E L M D + I + IDNL N
Sbjct: 616 KETAISFVGAIETVDKALELSNLERRWPLSTEELLIAMNVDSMDTLSDIGQSDIDNLSVN 675
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 489 TWNMLLDMLLTLVGSFEVDWLISVLTVLS 575
+W+ + L+ SFE DWL S+ LS
Sbjct: 357 SWSQVTGFRTALLNSFEQDWLASMSWNLS 385
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 173 FELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTM 352
+ L H E + + ++NG T ++ G G +RLT+ + F+++LD +
Sbjct: 82 YTLNHLEELEQQFAERMFSENGSL-TWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKV 140
Query: 353 KFI 361
+FI
Sbjct: 141 QFI 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,453
Number of Sequences: 5004
Number of extensions: 63987
Number of successful extensions: 150
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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