Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1i06
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 117 8e-27
01_01_1032 - 8174958-8175101,8175625-8175923,8176277-8176409,817... 30 1.5
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 30 2.0
05_03_0515 + 14930736-14932697 30 2.0
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 29 3.6
01_01_1030 + 8158901-8159050,8159178-8159310,8159410-8159708,816... 29 3.6
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 4.7
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 4.7
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 29 4.7
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 29 4.7
01_05_0645 - 23899579-23904483 29 4.7
05_01_0326 - 2558237-2558344,2558605-2558706,2558867-2558944,255... 28 8.3
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 28 8.3
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 117 bits (282), Expect = 8e-27
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 17/134 (12%)
Frame = +2
Query: 263 VEYIGFAAGYKIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQ 442
+E IGF G+++ ER T E PRF D L+ +KFIC DFW+ ++KKQIDNL+TNH+G +VLQ
Sbjct: 37 IEAIGFQVGHQLTERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
Query: 443 DNAFRFLTNFS-----------------NGHQYLEYAPRYVAYTCGLIRGGLANLCINSI 571
DN FR+LT S G + + + CG+IRG L NL I+
Sbjct: 97 DNHFRWLTRVSVDPSVESMDATENDSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCS 156
Query: 572 VTAEVQSMPSCKFH 613
VTA++ ++P+C+ H
Sbjct: 157 VTADMSNLPACELH 170
>01_01_1032 -
8174958-8175101,8175625-8175923,8176277-8176409,
8176525-8176671
Length = 240
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +2
Query: 212 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 376
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 12 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 69
Query: 377 TCIYKKQIDNLRTNHQGVYVLQDNAFRFLT 466
I+K + ++ ++ H + N RFL+
Sbjct: 70 ELIHKVRPEDQKSVHSQKFCASTNGMRFLS 99
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 501 LLDMLLTLVGSFEVDWLISVLTVLSQQKFSLCLHVNFIYTFKEHNTNLDLLCLHWF*YVI 680
LL L+ F +W I L + S FSL + ++F + ++ NT+ L L W Y++
Sbjct: 17 LLPALVANAQQFWNEWEIQCLVLAS---FSLQVFLHFFSSIRKGNTSRLLSSLLWLAYLL 73
Query: 681 TCYV 692
YV
Sbjct: 74 ADYV 77
>05_03_0515 + 14930736-14932697
Length = 653
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 543 DWLISVLTVLSQQKFSLCLHVNFIYTFKEHNTNLDLLCLHWF*YVITCYVIV 698
DW + VL +LS F L + V F ++ +TN L L W Y++ ++ V
Sbjct: 10 DWELQVLVLLS---FMLQVFVFFSGGLRQRSTNSSLRILVWLAYLVADFIAV 58
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 152 RMADDIIFELLHSEIINYSIEKFKNN-DNGEKETDLSVVEYIGFAAGYKIMERLTREWPR 328
+M+ + E + + + ++++K + N +K+ + + I GYK++++ R+W R
Sbjct: 64 KMSSSVKIESVVPDDLMAKMDRYKKDLQNMKKQKEAVESKQIKQEEGYKLLQQEQRKWKR 123
Query: 329 FKDELDT 349
K+ L++
Sbjct: 124 DKENLNS 130
>01_01_1030 +
8158901-8159050,8159178-8159310,8159410-8159708,
8160147-8160287
Length = 240
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 212 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 376
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 13 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 70
Query: 377 TCIYKKQIDNLRTNHQGVYVLQDNAFRFL 463
++K + ++ ++ H + N RFL
Sbjct: 71 ELVHKVRPEDQKSVHSQKFCSSTNGMRFL 99
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 512 VAYTCGLIRGGLANLCINSIVTAEVQSM 595
+ Y CGL +G +AN C S V E+Q++
Sbjct: 485 ICYKCGL-KGHIANRCFKSKVKKEIQAL 511
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 512 VAYTCGLIRGGLANLCINSIVTAEVQSM 595
+ Y CGL +G +AN C S V E+Q++
Sbjct: 804 ICYKCGL-KGHIANRCFKSKVKKEIQAL 830
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 431 YVLQDNAFRFLTNFSNGHQYLEYAPR--YVAYTCGLIRGGLANLCI 562
Y+ + A FLT+F GH Y++ PR ++ G I G N+ +
Sbjct: 499 YISMNQAVSFLTDFKLGH-YMKIPPRSMFLVQFIGTIVAGTVNMSV 543
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 402 IIFVQTTKEFMYFKIMHSVF*QIFLMVISTWNMLLDMLLTLVGSFEVDWLISVLTVLSQQ 581
+IFV + ++ IM + FL +L ++LTLV E+ +ISV T +S Q
Sbjct: 480 LIFVHVIESLVFVPIMIGIL--FFLFEFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQ 537
Query: 582 KF 587
F
Sbjct: 538 FF 539
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 512 VAYTCGLIRGGLANLCINSIVTAEVQSM 595
+ Y CGL +G +AN C S V E+Q++
Sbjct: 724 ICYKCGL-KGHIANRCFKSKVKKEIQAL 750
>05_01_0326 -
2558237-2558344,2558605-2558706,2558867-2558944,
2559024-2559089,2559885-2559975,2560414-2560490,
2560905-2561114,2561202-2561319,2561824-2561921,
2562037-2562102,2562189-2562351,2563542-2563674,
2563760-2563793
Length = 447
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 209 IEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTRE 319
I FKN +ET +VE++ + G+K +ER++++
Sbjct: 188 ITAFKNKAPTTEETMTKIVEFVQQSKGWKNVERVSKD 224
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 410 RTNHQGVYVLQDNAFRFL---TNFSNG-HQYLEYAPRYVAYTCGLIRGGLANLC 559
R HQG + + F F T F +G QY+E +YV GL+R GL C
Sbjct: 147 RKGHQGWMKQEGSYFIFPGGGTMFPDGAEQYIEKLAQYVPLKSGLLRTGLDMGC 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,630
Number of Sequences: 37544
Number of extensions: 334409
Number of successful extensions: 630
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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