Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h21
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.4  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   3.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   5.5  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   7.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.6  

>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 597 IACLVPYLKSFSSNVGSHTFLNTLKSILI 511
           I C++   K  S+  G +TF+N L+S LI
Sbjct: 97  IICVIGLWKGLSAMSGKNTFINGLQSYLI 125


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 467 VPKLILLQNPIKWLMIKIDFSVLRNVWDPTFEEKDFKYGTKQA 595
           VP+L+ L +PIK  +  +D S    +  P F  KD   G++ A
Sbjct: 574 VPRLMFLPDPIKVTLENLDDSYREQIEIP-FNPKDPSMGSRSA 615


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 35   FKISGFLHSILDNHL 79
            F +  +LH +LDNHL
Sbjct: 1528 FPVESYLHKVLDNHL 1542


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 170 VPIKYVRRLYPLASRWNTIKNL--HLGINRPXYSITS 274
           VP KY ++LY + +  +T++N+  +L    P Y +TS
Sbjct: 467 VPYKYAKKLYSILNGGSTLRNVNDYLAALNPGY-VTS 502


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 547 PHVS*YTEIYFDHQPFNRVLKQYQFRYAFYV 455
           PH+      +F H+ F+ +L +Y+ +  FY+
Sbjct: 55  PHLLLRRGAFFSHRDFDMILDRYEQKKPFYL 85


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 56  HSILDNHLTKWKIVYCVK*NVEDTAXKKQHYCHGRKMAVP 175
           H++ D      K+ + ++ N+E  + +++H C+   +AVP
Sbjct: 580 HTVHDKCQKVAKLDHYIRDNIELNSKEREHDCYEGTLAVP 619


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 181 FNWNSHLAPMAIMLLFXSC--IFNILFHTINNFPFC*MIIQN 62
           ++WN  L  +A  L + SC   F   F ++ N PFC M+  +
Sbjct: 103 YDWN--LTGVAARLGYLSCGLFFVSYFFSLKNNPFCLMLFSS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,132
Number of Sequences: 5004
Number of extensions: 46521
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)