Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h21
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    32   0.31 
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    27   8.9  

>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 176 IKYVRRLYPLASRWNTIKNLHLGINRPXYSITSYVTNLQNSF 301
           I+Y+ +L+PL  ++ TIK+ H+ +NR  + +   + N  N+F
Sbjct: 34  IQYLEKLFPLHVKYLTIKSDHITVNRTTFQLK--ICNKYNNF 73


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 579 YLKSFSSNVGSHTFLNTLKSILIINHLIGF 490
           Y+KS   N GSH F+  +  I++I  L+GF
Sbjct: 529 YVKSLEKNDGSHEFIGII--IVLIIFLVGF 556


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 128 LYLQHFISHNKQFSILLNDYPKLNVKNLKF 39
           ++   F+ HNK + I+   +P   VKNL F
Sbjct: 54  MFYTFFVPHNKIYYIIRQIFPGFVVKNLSF 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,397
Number of Sequences: 27780
Number of extensions: 253736
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)