Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1h18
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 66 6e-12
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 53 3e-08
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 32 0.068
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 28 1.5
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 27 1.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.6
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 4.5
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 5.9
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.9
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 65.7 bits (153), Expect = 6e-12
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Frame = +1
Query: 133 GPKLMENRKPFELKQVLIWYNLFQVIFS---CWLFYESIVSGWFTTYSFRCQPVDYSNTP 303
G +M NRKP + +++ +N I S L E + + F C +
Sbjct: 72 GRAIMTNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFRNYMRNGLFYCV---CDSRH 128
Query: 304 ETLRTVNGCWWYYXXXXXXXXXXXXXVMRKKFDHVSKLHVIHHGIMPMSVWFGVKFTPGG 483
T R V + Y ++KK ++ LH HHGI + + + G
Sbjct: 129 FTQRLVTLYYLNYLTKYLELMDTVFLFLKKK--PLAFLHCYHHGITALLCFTQLL---GR 183
Query: 484 HSTFFGM--LNTFVHIVMYSYYLLAALGPQVQKYLWWKKYLTALQMVQFVLVFI 639
S +G+ LN +VH++MYSYY LAA G +V WWK+++T +Q++QFVL I
Sbjct: 184 TSVQWGVIGLNLYVHVIMYSYYFLAACGRRV----WWKQWVTRVQIIQFVLDLI 233
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 53.2 bits (122), Expect = 3e-08
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Frame = +1
Query: 127 VLGPKLMENRKPFELKQVLIWYNLFQVIFSC---WLFYESIVSGWFTTYSFRCQPVDYSN 297
++G ++M NR+P L+++ +YNL I S L +E + + + F +
Sbjct: 50 LVGGRIMRNRQPIRLQKIFQYYNLTFSIASAILALLIFEQVAPAIYK-HGFFFSICNEKA 108
Query: 298 TPETLRTVNGCWWYYXXXXXXXXXXXXXVMRKKFDHVSKLHVIHHGIMPMSVWFGVKFTP 477
+ L + C Y V+RKK + LH HHG + V+ +
Sbjct: 109 WTQPLVFLYYC--AYISKFLELTDTFFLVLRKK--PLQFLHCYHHGATAVLVYTQIVGRT 164
Query: 478 GGHSTFFGMLNTFVHIVMYSYYLLAALGPQVQKYLWWKKYLTALQMVQF 624
S +N VH+ MY YY L A G +V WKK++T Q+VQF
Sbjct: 165 S-ISWLIIEINLLVHVTMYYYYYLVAKGIRVP----WKKWVTRFQIVQF 208
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 32.3 bits (70), Expect = 0.068
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -3
Query: 399 KLLAHHEEERVKELCKLR--EVIPPTAVDGP*CFWSV 295
K LA+H+ ++++ELC LR +++ A++ P C W +
Sbjct: 122 KALANHDLQQLEELCTLRTAQILKQQALNQPKCIWKL 158
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 484 HSTFFGMLNTFVHIVMYSYYLLAALGPQV 570
+S +FG L+++ +++M YYL+ + P V
Sbjct: 202 NSPYFGTLSSYGYVLMVLYYLIHVIKPPV 230
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 397 FDHVSKLHVIHHGIMPMSVWFGVK 468
FDH LHV H ++ ++ WFGVK
Sbjct: 165 FDH---LHVGHKVLLTLTAWFGVK 185
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = -3
Query: 582 QILLNLRSEGCQQVI*IHYDVYESIEHTEECGVTTRCKFDAKPNGHWHDTVVNDV 418
Q+ L+ S G QV ++Y + +S + ++CG+T+ C + P+G + TVV +V
Sbjct: 239 QLTLSDDSHGPHQVG-LNYHLAKS--YLDKCGITSLCMIEKGPDG--NGTVVKNV 288
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 504 AQYFRTHRNVFILLAGSPRTAGSEVSVVEEIPN 602
A+ + +NVF++L G+ AG + V EIP+
Sbjct: 1384 AEVMESIKNVFMILHGAGALAGPTIEVDPEIPD 1416
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 261 RREPPTDYTLIKEPTAEYNLEQVIPNENL 175
R EPP D + PT+ Y++ Q++ E L
Sbjct: 837 RLEPPLDELVWDAPTSSYSVRQMLSQELL 865
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 198 QVIPNENLLQFEWFPIFH*LRSKY 127
+++PNE LL E+ I+H + KY
Sbjct: 254 ELVPNEELLGEEYSHIYHTISKKY 277
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 537 ILLAGSPRTAGSEVSVVEEIPNRSSNGPVRTRVHSCVPATVHRLRLSTS 683
+L+ SP+T V+ I +RSS+ VR V + V T H L+L S
Sbjct: 47 VLVFTSPKT-----DAVKGIVSRSSSNVVRVNVTAKVGRTTHVLKLKDS 90
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 432 RYHANVRLVWRQIYTWWSLHILRYAQYFRTHRNV 533
RYH N ++ W + L IL + Q RNV
Sbjct: 1020 RYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNV 1053
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,787
Number of Sequences: 5004
Number of extensions: 63603
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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